Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 MTATP6P19-201ENST00000413797 659 ntBASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 AC017007.3-201ENST00000479865 435 ntBASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 ESPNP-201ENST00000270691 2015 ntBASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 INGX-201ENST00000359239 846 ntBASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 ECEL1P2-202ENST00000465689 757 ntBASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 CAMTA1-205ENST00000467404 546 ntTSL 3 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 AC008687.5-201ENST00000593746 558 ntBASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS9D1Q9Y2B5 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 AC009947.2-201ENST00000444014 672 ntBASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 AC145285.6-201ENST00000604632 637 ntBASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 AC010240.3-201ENST00000607688 395 ntBASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 AC006213.4-201ENST00000616184 634 ntBASIC18.23■□□□□ 0.51
VPS9D1Q9Y2B5 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms