Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 FZD10-202ENST00000539839 3282 ntBASIC17.77■□□□□ 0.44
VPS4AQ9UN37 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 PCED1CP-201ENST00000419887 785 ntBASIC17.77■□□□□ 0.44
VPS4AQ9UN37 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 CCR12P-201ENST00000446203 998 ntBASIC17.77■□□□□ 0.44
VPS4AQ9UN37 PRSS44-201ENST00000515154 1146 ntBASIC17.77■□□□□ 0.44
VPS4AQ9UN37 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 KRT8P11-201ENST00000409686 1436 ntBASIC17.77■□□□□ 0.44
VPS4AQ9UN37 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VPS4AQ9UN37 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
VPS4AQ9UN37 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS4AQ9UN37 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS4AQ9UN37 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS4AQ9UN37 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.77■□□□□ 0.43
VPS4AQ9UN37 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS4AQ9UN37 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VPS4AQ9UN37 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 AL354751.1-201ENST00000412768 1863 ntBASIC17.76■□□□□ 0.43
VPS4AQ9UN37 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.76■□□□□ 0.43
VPS4AQ9UN37 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 COX11P1-201ENST00000489116 835 ntBASIC17.76■□□□□ 0.43
VPS4AQ9UN37 YBX1P2-201ENST00000489612 999 ntBASIC17.76■□□□□ 0.43
VPS4AQ9UN37 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 AC126763.1-201ENST00000552015 2118 ntBASIC17.76■□□□□ 0.43
VPS4AQ9UN37 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.76■□□□□ 0.43
VPS4AQ9UN37 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VPS4AQ9UN37 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 IER3-202ENST00000376377 1350 ntBASIC17.75■□□□□ 0.43
VPS4AQ9UN37 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
VPS4AQ9UN37 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms