Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 AL022342.1-201ENST00000400363 863 ntBASIC21.59■■□□□ 1.05
DDX4Q9NQI0 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.59■■□□□ 1.05
DDX4Q9NQI0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 AC132008.2-207ENST00000454517 770 ntBASIC21.58■■□□□ 1.05
DDX4Q9NQI0 AL662844.1-201ENST00000546340 181 ntBASIC21.58■■□□□ 1.05
DDX4Q9NQI0 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
DDX4Q9NQI0 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.58■■□□□ 1.04
DDX4Q9NQI0 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
DDX4Q9NQI0 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
DDX4Q9NQI0 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 MTCL1P1-201ENST00000446207 792 ntBASIC21.57■■□□□ 1.04
DDX4Q9NQI0 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 AC009154.2-201ENST00000621177 724 ntBASIC21.57■■□□□ 1.04
DDX4Q9NQI0 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 TP73-AS1-210ENST00000637775 1455 ntBASIC21.57■■□□□ 1.04
DDX4Q9NQI0 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
DDX4Q9NQI0 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 MEG3-211ENST00000452514 461 ntTSL 3 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 AC148477.8-201ENST00000624298 468 ntBASIC21.56■■□□□ 1.04
DDX4Q9NQI0 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC21.56■■□□□ 1.04
DDX4Q9NQI0 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 MOK-208ENST00000519058 917 ntTSL 2 BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 AL138831.2-201ENST00000606564 490 ntBASIC21.55■■□□□ 1.04
DDX4Q9NQI0 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC21.55■■□□□ 1.04
DDX4Q9NQI0 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms