Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 AC009102.3-201ENST00000623118 1491 ntBASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
TRIM39Q9HCM9 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM39Q9HCM9 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 SPDYE13P-201ENST00000445314 798 ntBASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 VENTXP5-201ENST00000523979 775 ntBASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 DBP-204ENST00000599385 709 ntTSL 3 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM39Q9HCM9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 PCED1CP-201ENST00000419887 785 ntBASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.15■□□□□ 0.5
TRIM39Q9HCM9 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms