Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF39Q9H2S5 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.41■□□□□ 0.86
RNF39Q9H2S5 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RNF39Q9H2S5 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
RNF39Q9H2S5 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RNF39Q9H2S5 AL032819.2-201ENST00000624543 2162 ntBASIC20.41■□□□□ 0.86
RNF39Q9H2S5 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 OR4B1-201ENST00000309562 930 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 AL365338.1-201ENST00000422282 858 ntBASIC20.4■□□□□ 0.86
RNF39Q9H2S5 CDY12P-201ENST00000440679 1015 ntBASIC20.4■□□□□ 0.86
RNF39Q9H2S5 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 CDY13P-201ENST00000445813 1015 ntBASIC20.4■□□□□ 0.86
RNF39Q9H2S5 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 OFD1P3Y-201ENST00000453312 783 ntBASIC20.4■□□□□ 0.86
RNF39Q9H2S5 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 AC234775.3-201ENST00000564612 656 ntBASIC20.4■□□□□ 0.86
RNF39Q9H2S5 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.4■□□□□ 0.86
RNF39Q9H2S5 AP003485.1-201ENST00000625093 753 ntBASIC20.4■□□□□ 0.86
RNF39Q9H2S5 AP000550.4-202ENST00000639755 178 ntBASIC20.4■□□□□ 0.86
RNF39Q9H2S5 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
RNF39Q9H2S5 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.39■□□□□ 0.86
RNF39Q9H2S5 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF39Q9H2S5 AC008556.1-201ENST00000610908 2040 ntBASIC20.39■□□□□ 0.86
RNF39Q9H2S5 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF39Q9H2S5 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
RNF39Q9H2S5 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.39■□□□□ 0.86
RNF39Q9H2S5 RCC2P3-201ENST00000418112 1537 ntBASIC20.39■□□□□ 0.85
RNF39Q9H2S5 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 LINC00570-201ENST00000417473 1330 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 AC005332.1-201ENST00000577698 1310 ntBASIC20.39■□□□□ 0.85
RNF39Q9H2S5 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 SNORA72.3-201ENST00000365074 132 ntBASIC20.39■□□□□ 0.85
RNF39Q9H2S5 NSL1-201ENST00000366976 722 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 CSNK1A1P3-201ENST00000504105 330 ntBASIC20.39■□□□□ 0.85
RNF39Q9H2S5 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 ARL1-203ENST00000539055 1231 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 AC080013.3-201ENST00000606839 578 ntBASIC20.39■□□□□ 0.85
RNF39Q9H2S5 AC112503.2-201ENST00000609005 552 ntBASIC20.39■□□□□ 0.85
RNF39Q9H2S5 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF39Q9H2S5 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 MTCO1P21-201ENST00000416634 589 ntBASIC20.38■□□□□ 0.85
RNF39Q9H2S5 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 SPDYE13P-201ENST00000445314 798 ntBASIC20.38■□□□□ 0.85
RNF39Q9H2S5 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 AC092597.1-201ENST00000487352 616 ntBASIC20.38■□□□□ 0.85
RNF39Q9H2S5 TRIM36-IT1-201ENST00000503723 881 ntBASIC20.38■□□□□ 0.85
RNF39Q9H2S5 AC021546.1-201ENST00000518927 1031 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 AC005609.4-201ENST00000625071 447 ntBASIC20.38■□□□□ 0.85
RNF39Q9H2S5 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF39Q9H2S5 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms