Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
SHANK3Q9BYB0 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 CTNS-203ENST00000399306 803 ntTSL 3 BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 KIRREL3-AS3-201ENST00000404882 831 ntBASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 USP48-205ENST00000421625 2818 ntTSL 2 BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 HS6ST1P1-201ENST00000481504 1234 ntBASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 AC008687.5-201ENST00000593746 558 ntBASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 AC027601.4-201ENST00000611259 610 ntBASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 AL691403.2-201ENST00000618460 490 ntBASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 AL356309.3-201ENST00000624132 1934 ntBASIC23.67■■□□□ 1.38
SHANK3Q9BYB0 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 KRT18P65-201ENST00000439811 1286 ntBASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
SHANK3Q9BYB0 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 KRT18P27-201ENST00000427733 1299 ntBASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 AC112698.1-201ENST00000510299 916 ntBASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 AC107918.4-202ENST00000641623 219 ntBASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
SHANK3Q9BYB0 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 MIR940-201ENST00000401276 94 ntBASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
SHANK3Q9BYB0 KRT8P47-201ENST00000604727 1398 ntBASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 AC079776.2-201ENST00000641154 1609 ntBASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 AC007967.3-201ENST00000434308 558 ntBASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
SHANK3Q9BYB0 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SHANK3Q9BYB0 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC23.63■■□□□ 1.37
SHANK3Q9BYB0 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
SHANK3Q9BYB0 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SHANK3Q9BYB0 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SHANK3Q9BYB0 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SHANK3Q9BYB0 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SHANK3Q9BYB0 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms