Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.71■□□□□ 0.27
NPAS1Q99742 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NPAS1Q99742 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NPAS1Q99742 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
NPAS1Q99742 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.71■□□□□ 0.27
NPAS1Q99742 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NPAS1Q99742 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.71■□□□□ 0.27
NPAS1Q99742 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.71■□□□□ 0.27
NPAS1Q99742 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NPAS1Q99742 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NPAS1Q99742 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NPAS1Q99742 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NPAS1Q99742 AC092597.1-201ENST00000487352 616 ntBASIC16.71■□□□□ 0.27
NPAS1Q99742 AC022616.7-201ENST00000525383 220 ntBASIC16.71■□□□□ 0.27
NPAS1Q99742 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.71■□□□□ 0.27
NPAS1Q99742 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.71■□□□□ 0.27
NPAS1Q99742 MIR3917-201ENST00000580971 93 ntBASIC16.71■□□□□ 0.27
NPAS1Q99742 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.71■□□□□ 0.27
NPAS1Q99742 USF2-205ENST00000594064 1179 ntTSL 2 BASIC16.71■□□□□ 0.27
NPAS1Q99742 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
NPAS1Q99742 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.71■□□□□ 0.27
NPAS1Q99742 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.71■□□□□ 0.27
NPAS1Q99742 AL133373.2-201ENST00000623187 2828 ntBASIC16.71■□□□□ 0.27
NPAS1Q99742 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.71■□□□□ 0.27
NPAS1Q99742 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.71■□□□□ 0.27
NPAS1Q99742 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NPAS1Q99742 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.71■□□□□ 0.27
NPAS1Q99742 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NPAS1Q99742 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
NPAS1Q99742 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.71■□□□□ 0.27
NPAS1Q99742 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
NPAS1Q99742 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.7■□□□□ 0.26
NPAS1Q99742 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.7■□□□□ 0.26
NPAS1Q99742 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.7■□□□□ 0.26
NPAS1Q99742 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.7■□□□□ 0.26
NPAS1Q99742 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC16.7■□□□□ 0.26
NPAS1Q99742 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.7■□□□□ 0.26
NPAS1Q99742 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
NPAS1Q99742 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.7■□□□□ 0.26
NPAS1Q99742 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 RASA4DP-201ENST00000460726 1199 ntBASIC16.7■□□□□ 0.26
NPAS1Q99742 AL049597.2-201ENST00000565575 961 ntBASIC16.7■□□□□ 0.26
NPAS1Q99742 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.7■□□□□ 0.26
NPAS1Q99742 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.7■□□□□ 0.26
NPAS1Q99742 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.7■□□□□ 0.26
NPAS1Q99742 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
NPAS1Q99742 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
NPAS1Q99742 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 AC073592.3-201ENST00000625118 1834 ntBASIC16.7■□□□□ 0.26
NPAS1Q99742 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.7■□□□□ 0.26
NPAS1Q99742 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NPAS1Q99742 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.7■□□□□ 0.26
NPAS1Q99742 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
NPAS1Q99742 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.69■□□□□ 0.26
NPAS1Q99742 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
NPAS1Q99742 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.69■□□□□ 0.26
NPAS1Q99742 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
NPAS1Q99742 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.69■□□□□ 0.26
NPAS1Q99742 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.69■□□□□ 0.26
NPAS1Q99742 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.69■□□□□ 0.26
NPAS1Q99742 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 AP000593.1-201ENST00000393668 712 ntBASIC16.69■□□□□ 0.26
NPAS1Q99742 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.69■□□□□ 0.26
NPAS1Q99742 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.69■□□□□ 0.26
NPAS1Q99742 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
NPAS1Q99742 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.69■□□□□ 0.26
NPAS1Q99742 NTF6B-201ENST00000591913 560 ntBASIC16.69■□□□□ 0.26
NPAS1Q99742 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.69■□□□□ 0.26
NPAS1Q99742 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.69■□□□□ 0.26
NPAS1Q99742 AL031432.5-201ENST00000641059 760 ntBASIC16.69■□□□□ 0.26
NPAS1Q99742 AC106820.2-201ENST00000563775 3264 ntBASIC16.69■□□□□ 0.26
NPAS1Q99742 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.69■□□□□ 0.26
NPAS1Q99742 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
NPAS1Q99742 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms