Protein–RNA interactions for Protein: Q96DX8

RTP4, Receptor-transporting protein 4, humanhuman

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTP4Q96DX8 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.71■□□□□ 0.59
RTP4Q96DX8 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.71■□□□□ 0.59
RTP4Q96DX8 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.71■□□□□ 0.59
RTP4Q96DX8 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
RTP4Q96DX8 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.71■□□□□ 0.59
RTP4Q96DX8 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.71■□□□□ 0.59
RTP4Q96DX8 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.71■□□□□ 0.59
RTP4Q96DX8 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.71■□□□□ 0.59
RTP4Q96DX8 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.71■□□□□ 0.59
RTP4Q96DX8 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTP4Q96DX8 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.71■□□□□ 0.59
RTP4Q96DX8 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
RTP4Q96DX8 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
RTP4Q96DX8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.7■□□□□ 0.58
RTP4Q96DX8 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RTP4Q96DX8 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RTP4Q96DX8 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RTP4Q96DX8 AC134043.2-201ENST00000624206 2238 ntBASIC18.7■□□□□ 0.58
RTP4Q96DX8 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RTP4Q96DX8 AP000997.3-201ENST00000623333 2250 ntBASIC18.7■□□□□ 0.58
RTP4Q96DX8 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
RTP4Q96DX8 AC005521.1-201ENST00000393351 872 ntBASIC18.7■□□□□ 0.58
RTP4Q96DX8 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RTP4Q96DX8 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RTP4Q96DX8 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.7■□□□□ 0.58
RTP4Q96DX8 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.7■□□□□ 0.58
RTP4Q96DX8 MNT-208ENST00000575394 606 ntTSL 4 BASIC18.7■□□□□ 0.58
RTP4Q96DX8 AL445228.2-201ENST00000605589 952 ntBASIC18.7■□□□□ 0.58
RTP4Q96DX8 AC010240.3-201ENST00000607688 395 ntBASIC18.7■□□□□ 0.58
RTP4Q96DX8 AC010947.1-201ENST00000623454 693 ntBASIC18.7■□□□□ 0.58
RTP4Q96DX8 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.7■□□□□ 0.58
RTP4Q96DX8 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RTP4Q96DX8 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RTP4Q96DX8 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.7■□□□□ 0.58
RTP4Q96DX8 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC18.7■□□□□ 0.58
RTP4Q96DX8 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RTP4Q96DX8 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.7■□□□□ 0.58
RTP4Q96DX8 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.7■□□□□ 0.58
RTP4Q96DX8 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTP4Q96DX8 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTP4Q96DX8 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.69■□□□□ 0.58
RTP4Q96DX8 AC113347.1-201ENST00000413321 391 ntBASIC18.69■□□□□ 0.58
RTP4Q96DX8 SEC1P-202ENST00000473944 940 ntBASIC18.69■□□□□ 0.58
RTP4Q96DX8 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RTP4Q96DX8 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RTP4Q96DX8 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTP4Q96DX8 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTP4Q96DX8 KRT18P22-201ENST00000402024 1347 ntBASIC18.69■□□□□ 0.58
RTP4Q96DX8 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RTP4Q96DX8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.69■□□□□ 0.58
RTP4Q96DX8 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RTP4Q96DX8 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTP4Q96DX8 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTP4Q96DX8 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
RTP4Q96DX8 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTP4Q96DX8 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.68■□□□□ 0.58
RTP4Q96DX8 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
RTP4Q96DX8 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTP4Q96DX8 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTP4Q96DX8 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTP4Q96DX8 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.68■□□□□ 0.58
RTP4Q96DX8 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTP4Q96DX8 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTP4Q96DX8 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.68■□□□□ 0.58
RTP4Q96DX8 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.68■□□□□ 0.58
RTP4Q96DX8 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTP4Q96DX8 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTP4Q96DX8 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms