Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 SOD2-201ENST00000337404 991 ntTSL 2 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 AC012645.4-201ENST00000610691 1061 ntBASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMC1BQ8NDV3 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 AL139400.1-201ENST00000366220 510 ntBASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 METTL26-205ENST00000397666 726 ntTSL 2 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 AC069262.1-201ENST00000539058 672 ntBASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 TCAP-202ENST00000578283 583 ntTSL 5 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMC1BQ8NDV3 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 ETFA-208ENST00000559602 792 ntTSL 3 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 LSM12-202ENST00000585388 942 ntTSL 3 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
SMC1BQ8NDV3 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 KRT18P27-201ENST00000427733 1299 ntBASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 HLA-V-201ENST00000429037 534 ntBASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 Z92544.3-201ENST00000624747 417 ntBASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 AL691432.2-201ENST00000607222 2038 ntBASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 AF106564.1-201ENST00000607058 2553 ntBASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SMC1BQ8NDV3 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC21.65■■□□□ 1.06
SMC1BQ8NDV3 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms