Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 AP000593.1-201ENST00000393668 712 ntBASIC19.06■□□□□ 0.64
CCDC89Q8N998 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 SLC25A1P4-201ENST00000567977 778 ntBASIC19.06■□□□□ 0.64
CCDC89Q8N998 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 DGCR10-201ENST00000609839 495 ntBASIC19.06■□□□□ 0.64
CCDC89Q8N998 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.06■□□□□ 0.64
CCDC89Q8N998 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC19.06■□□□□ 0.64
CCDC89Q8N998 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CCDC89Q8N998 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC89Q8N998 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC89Q8N998 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
CCDC89Q8N998 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
CCDC89Q8N998 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 MFAP1P1-201ENST00000442257 1255 ntBASIC19.05■□□□□ 0.64
CCDC89Q8N998 TSPY20P-201ENST00000450910 630 ntBASIC19.05■□□□□ 0.64
CCDC89Q8N998 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC89Q8N998 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.05■□□□□ 0.64
CCDC89Q8N998 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.05■□□□□ 0.64
CCDC89Q8N998 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
CCDC89Q8N998 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CCDC89Q8N998 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.05■□□□□ 0.64
CCDC89Q8N998 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CCDC89Q8N998 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 AL023284.2-201ENST00000405850 579 ntBASIC19.04■□□□□ 0.64
CCDC89Q8N998 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 FLJ13224-201ENST00000313737 1514 ntBASIC19.04■□□□□ 0.64
CCDC89Q8N998 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC89Q8N998 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.04■□□□□ 0.64
CCDC89Q8N998 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC89Q8N998 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC89Q8N998 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC89Q8N998 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC89Q8N998 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC89Q8N998 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC89Q8N998 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CCDC89Q8N998 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms