Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
KRT39Q6A163 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.82■□□□□ 0.76
KRT39Q6A163 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.82■□□□□ 0.76
KRT39Q6A163 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.81■□□□□ 0.76
KRT39Q6A163 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.81■□□□□ 0.76
KRT39Q6A163 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.81■□□□□ 0.76
KRT39Q6A163 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
KRT39Q6A163 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.81■□□□□ 0.76
KRT39Q6A163 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
KRT39Q6A163 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
KRT39Q6A163 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
KRT39Q6A163 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
KRT39Q6A163 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
KRT39Q6A163 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
KRT39Q6A163 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.8■□□□□ 0.76
KRT39Q6A163 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
KRT39Q6A163 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.8■□□□□ 0.76
KRT39Q6A163 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.8■□□□□ 0.76
KRT39Q6A163 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.8■□□□□ 0.76
KRT39Q6A163 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
KRT39Q6A163 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
KRT39Q6A163 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.79■□□□□ 0.76
KRT39Q6A163 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.79■□□□□ 0.76
KRT39Q6A163 AL024508.2-201ENST00000607749 1894 ntBASIC19.79■□□□□ 0.76
KRT39Q6A163 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
KRT39Q6A163 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.79■□□□□ 0.76
KRT39Q6A163 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
KRT39Q6A163 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
KRT39Q6A163 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
KRT39Q6A163 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.79■□□□□ 0.76
KRT39Q6A163 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
KRT39Q6A163 PVRIG2P-201ENST00000435460 978 ntBASIC19.79■□□□□ 0.76
KRT39Q6A163 RASA4DP-201ENST00000460726 1199 ntBASIC19.79■□□□□ 0.76
KRT39Q6A163 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.79■□□□□ 0.76
KRT39Q6A163 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.79■□□□□ 0.76
KRT39Q6A163 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.79■□□□□ 0.76
KRT39Q6A163 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.79■□□□□ 0.76
KRT39Q6A163 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
KRT39Q6A163 AC006011.2-201ENST00000621313 1158 ntBASIC19.79■□□□□ 0.76
KRT39Q6A163 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
KRT39Q6A163 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.79■□□□□ 0.76
KRT39Q6A163 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
KRT39Q6A163 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 LINC01126-201ENST00000623515 1646 ntBASIC19.79■□□□□ 0.76
KRT39Q6A163 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.79■□□□□ 0.76
KRT39Q6A163 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.79■□□□□ 0.76
KRT39Q6A163 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
KRT39Q6A163 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.78■□□□□ 0.76
KRT39Q6A163 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
KRT39Q6A163 PHGDH-209ENST00000641074 1780 ntBASIC19.78■□□□□ 0.76
KRT39Q6A163 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
KRT39Q6A163 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms