Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 AC011498.5-201ENST00000592027 486 ntBASIC21.29■■□□□ 1
CCDC144BQ3MJ40 AC092329.2-201ENST00000598402 547 ntBASIC21.29■■□□□ 1
CCDC144BQ3MJ40 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC21.29■■□□□ 1
CCDC144BQ3MJ40 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 MCCD1P1-208ENST00000445732 328 ntBASIC21.28■■□□□ 1
CCDC144BQ3MJ40 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 MIR3180-5-201ENST00000583743 153 ntBASIC21.28■■□□□ 1
CCDC144BQ3MJ40 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CCDC144BQ3MJ40 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 AC016734.2-201ENST00000624325 1377 ntBASIC21.27■■□□□ 1
CCDC144BQ3MJ40 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 TSSC2-201ENST00000450217 709 ntBASIC21.27■■□□□ 1
CCDC144BQ3MJ40 SEC1P-202ENST00000473944 940 ntBASIC21.27■■□□□ 1
CCDC144BQ3MJ40 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 MIR3652-201ENST00000579335 131 ntBASIC21.27■■□□□ 1
CCDC144BQ3MJ40 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CCDC144BQ3MJ40 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.27■□□□□ 0.99
CCDC144BQ3MJ40 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC144BQ3MJ40 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC21.27■□□□□ 0.99
CCDC144BQ3MJ40 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CCDC144BQ3MJ40 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 AC067852.2-201ENST00000590513 2313 ntBASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CCDC144BQ3MJ40 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms