Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SF3A1Q15459 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.22■□□□□ 0.99
SF3A1Q15459 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.22■□□□□ 0.99
SF3A1Q15459 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.22■□□□□ 0.99
SF3A1Q15459 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SF3A1Q15459 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SF3A1Q15459 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.21■□□□□ 0.99
SF3A1Q15459 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC21.21■□□□□ 0.99
SF3A1Q15459 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.21■□□□□ 0.99
SF3A1Q15459 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.21■□□□□ 0.99
SF3A1Q15459 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.21■□□□□ 0.99
SF3A1Q15459 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.21■□□□□ 0.99
SF3A1Q15459 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
SF3A1Q15459 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SF3A1Q15459 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SF3A1Q15459 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SF3A1Q15459 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SF3A1Q15459 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.2■□□□□ 0.98
SF3A1Q15459 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SF3A1Q15459 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SF3A1Q15459 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
SF3A1Q15459 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SF3A1Q15459 MIR718-201ENST00000390190 70 ntBASIC21.2■□□□□ 0.98
SF3A1Q15459 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SF3A1Q15459 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.2■□□□□ 0.98
SF3A1Q15459 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SF3A1Q15459 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.2■□□□□ 0.98
SF3A1Q15459 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SF3A1Q15459 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SF3A1Q15459 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SF3A1Q15459 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SF3A1Q15459 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SF3A1Q15459 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
SF3A1Q15459 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
SF3A1Q15459 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.19■□□□□ 0.98
SF3A1Q15459 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 LETM1P2-201ENST00000597330 2178 ntBASIC21.19■□□□□ 0.98
SF3A1Q15459 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SF3A1Q15459 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 AC068880.1-201ENST00000507289 2297 ntBASIC21.19■□□□□ 0.98
SF3A1Q15459 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SF3A1Q15459 UNC93B2-201ENST00000285383 730 ntBASIC21.19■□□□□ 0.98
SF3A1Q15459 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.19■□□□□ 0.98
SF3A1Q15459 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.19■□□□□ 0.98
SF3A1Q15459 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.19■□□□□ 0.98
SF3A1Q15459 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC21.19■□□□□ 0.98
SF3A1Q15459 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
SF3A1Q15459 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SF3A1Q15459 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SF3A1Q15459 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.19■□□□□ 0.98
SF3A1Q15459 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SF3A1Q15459 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SF3A1Q15459 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.18■□□□□ 0.98
SF3A1Q15459 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.18■□□□□ 0.98
SF3A1Q15459 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.18■□□□□ 0.98
SF3A1Q15459 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
SF3A1Q15459 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC21.18■□□□□ 0.98
SF3A1Q15459 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
SF3A1Q15459 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SF3A1Q15459 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SF3A1Q15459 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
SF3A1Q15459 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SF3A1Q15459 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.18■□□□□ 0.98
SF3A1Q15459 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.18■□□□□ 0.98
SF3A1Q15459 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.18■□□□□ 0.98
SF3A1Q15459 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.18■□□□□ 0.98
SF3A1Q15459 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.18■□□□□ 0.98
SF3A1Q15459 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
SF3A1Q15459 AP000525.1-201ENST00000608286 694 ntBASIC21.18■□□□□ 0.98
SF3A1Q15459 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.18■□□□□ 0.98
SF3A1Q15459 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.18■□□□□ 0.98
SF3A1Q15459 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SF3A1Q15459 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SF3A1Q15459 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms