Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC004706.3-202ENST00000621574 984 ntBASIC11.31□□□□□ -0.6
HSPG2P98160 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HSPG2P98160 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
HSPG2P98160 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HSPG2P98160 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HSPG2P98160 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC11.31□□□□□ -0.6
HSPG2P98160 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HSPG2P98160 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HSPG2P98160 CCND1-203ENST00000536559 553 ntTSL 3 BASIC11.31□□□□□ -0.6
HSPG2P98160 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
HSPG2P98160 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC11.31□□□□□ -0.6
HSPG2P98160 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC11.31□□□□□ -0.6
HSPG2P98160 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
HSPG2P98160 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HSPG2P98160 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HSPG2P98160 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HSPG2P98160 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC11.3□□□□□ -0.6
HSPG2P98160 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 IGHV3-65-201ENST00000523210 341 ntBASIC11.3□□□□□ -0.6
HSPG2P98160 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC11.3□□□□□ -0.6
HSPG2P98160 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC11.3□□□□□ -0.6
HSPG2P98160 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
HSPG2P98160 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
HSPG2P98160 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC11.3□□□□□ -0.6
HSPG2P98160 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC11.3□□□□□ -0.6
HSPG2P98160 KRT19P2-202ENST00000557173 1012 ntBASIC11.3□□□□□ -0.6
HSPG2P98160 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
HSPG2P98160 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
HSPG2P98160 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC11.3□□□□□ -0.6
HSPG2P98160 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC11.3□□□□□ -0.6
HSPG2P98160 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC11.3□□□□□ -0.6
HSPG2P98160 DUX4L27-201ENST00000554796 1261 ntBASIC11.3□□□□□ -0.6
HSPG2P98160 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC11.3□□□□□ -0.6
HSPG2P98160 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC11.3□□□□□ -0.6
HSPG2P98160 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC11.3□□□□□ -0.6
HSPG2P98160 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC11.3□□□□□ -0.6
HSPG2P98160 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC11.3□□□□□ -0.6
HSPG2P98160 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC11.3□□□□□ -0.6
HSPG2P98160 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC11.3□□□□□ -0.6
HSPG2P98160 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC11.3□□□□□ -0.6
HSPG2P98160 NAA60-208ENST00000570819 833 ntTSL 2 BASIC11.3□□□□□ -0.6
HSPG2P98160 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC11.3□□□□□ -0.6
HSPG2P98160 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
HSPG2P98160 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC11.29□□□□□ -0.6
HSPG2P98160 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC11.29□□□□□ -0.6
HSPG2P98160 PMPCAP1-201ENST00000508114 1576 ntBASIC11.29□□□□□ -0.6
HSPG2P98160 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC11.29□□□□□ -0.6
HSPG2P98160 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC11.29□□□□□ -0.6
HSPG2P98160 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC11.29□□□□□ -0.6
HSPG2P98160 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC11.29□□□□□ -0.6
HSPG2P98160 Z82202.1-201ENST00000623446 1880 ntBASIC11.29□□□□□ -0.6
HSPG2P98160 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC11.29□□□□□ -0.6
HSPG2P98160 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC11.29□□□□□ -0.6
HSPG2P98160 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC11.29□□□□□ -0.6
HSPG2P98160 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC11.29□□□□□ -0.6
HSPG2P98160 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC11.29□□□□□ -0.6
HSPG2P98160 NOP2-220ENST00000545915 630 ntTSL 2 BASIC11.29□□□□□ -0.6
HSPG2P98160 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC11.29□□□□□ -0.6
HSPG2P98160 AC092902.6-201ENST00000641783 218 ntBASIC11.29□□□□□ -0.6
HSPG2P98160 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
HSPG2P98160 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HSPG2P98160 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
HSPG2P98160 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HSPG2P98160 AC245100.3-201ENST00000441281 285 ntBASIC11.28□□□□□ -0.6
HSPG2P98160 MSRA-206ENST00000521209 814 ntTSL 3 BASIC11.28□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms