Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 TSPY18P-201ENST00000441642 509 ntBASIC20.12■□□□□ 0.81
CLCN3P51790 AC113404.2-201ENST00000507884 177 ntBASIC20.12■□□□□ 0.81
CLCN3P51790 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC20.12■□□□□ 0.81
CLCN3P51790 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLCN3P51790 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.12■□□□□ 0.81
CLCN3P51790 AC099336.1-202ENST00000602961 463 ntBASIC20.12■□□□□ 0.81
CLCN3P51790 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.12■□□□□ 0.81
CLCN3P51790 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLCN3P51790 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLCN3P51790 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLCN3P51790 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLCN3P51790 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLCN3P51790 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.12■□□□□ 0.81
CLCN3P51790 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLCN3P51790 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLCN3P51790 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.12■□□□□ 0.81
CLCN3P51790 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCN3P51790 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.11■□□□□ 0.81
CLCN3P51790 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCN3P51790 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CLCN3P51790 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCN3P51790 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCN3P51790 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCN3P51790 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCN3P51790 AC126763.1-201ENST00000552015 2118 ntBASIC20.11■□□□□ 0.81
CLCN3P51790 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.11■□□□□ 0.81
CLCN3P51790 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCN3P51790 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCN3P51790 AC026396.1-201ENST00000419388 421 ntBASIC20.11■□□□□ 0.81
CLCN3P51790 IGHV3-47-201ENST00000425060 335 ntBASIC20.11■□□□□ 0.81
CLCN3P51790 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.11■□□□□ 0.81
CLCN3P51790 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.11■□□□□ 0.81
CLCN3P51790 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.11■□□□□ 0.81
CLCN3P51790 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC20.11■□□□□ 0.81
CLCN3P51790 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC20.11■□□□□ 0.81
CLCN3P51790 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.11■□□□□ 0.81
CLCN3P51790 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CLCN3P51790 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCN3P51790 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CLCN3P51790 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCN3P51790 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCN3P51790 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.1■□□□□ 0.81
CLCN3P51790 CROCCP3-202ENST00000420820 1947 ntBASIC20.1■□□□□ 0.81
CLCN3P51790 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCN3P51790 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCN3P51790 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCN3P51790 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CLCN3P51790 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC20.1■□□□□ 0.81
CLCN3P51790 AC008687.5-201ENST00000593746 558 ntBASIC20.1■□□□□ 0.81
CLCN3P51790 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CLCN3P51790 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CLCN3P51790 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCN3P51790 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CLCN3P51790 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCN3P51790 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCN3P51790 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.1■□□□□ 0.81
CLCN3P51790 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
CLCN3P51790 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CLCN3P51790 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.09■□□□□ 0.81
CLCN3P51790 AP000974.1-201ENST00000623909 2387 ntBASIC20.09■□□□□ 0.81
CLCN3P51790 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.09■□□□□ 0.81
CLCN3P51790 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 NSUN5P1-202ENST00000421140 1535 ntBASIC20.09■□□□□ 0.81
CLCN3P51790 NSUN5P2-203ENST00000457352 1529 ntBASIC20.09■□□□□ 0.81
CLCN3P51790 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.09■□□□□ 0.81
CLCN3P51790 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.09■□□□□ 0.81
CLCN3P51790 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.09■□□□□ 0.81
CLCN3P51790 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.09■□□□□ 0.81
CLCN3P51790 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.09■□□□□ 0.81
CLCN3P51790 KRT18P31-201ENST00000506277 1292 ntBASIC20.09■□□□□ 0.81
CLCN3P51790 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CLCN3P51790 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.09■□□□□ 0.81
CLCN3P51790 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.09■□□□□ 0.81
CLCN3P51790 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.09■□□□□ 0.81
CLCN3P51790 AC011840.4-201ENST00000578471 627 ntBASIC20.09■□□□□ 0.81
CLCN3P51790 AL121772.3-201ENST00000610840 674 ntBASIC20.09■□□□□ 0.81
CLCN3P51790 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.09■□□□□ 0.81
CLCN3P51790 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.09■□□□□ 0.81
CLCN3P51790 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.09■□□□□ 0.81
CLCN3P51790 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.09■□□□□ 0.81
CLCN3P51790 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CLCN3P51790 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLCN3P51790 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CLCN3P51790 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLCN3P51790 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CLCN3P51790 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLCN3P51790 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLCN3P51790 LINC00602-201ENST00000629776 2065 ntBASIC20.08■□□□□ 0.81
CLCN3P51790 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CLCN3P51790 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms