Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.04■□□□□ 0.64
COL6A3P12111 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
COL6A3P12111 AL358472.5-202ENST00000641448 1267 ntBASIC19.04■□□□□ 0.64
COL6A3P12111 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 AC006128.1-201ENST00000624704 1661 ntBASIC19.04■□□□□ 0.64
COL6A3P12111 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.04■□□□□ 0.64
COL6A3P12111 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.04■□□□□ 0.64
COL6A3P12111 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A3P12111 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC19.03■□□□□ 0.64
COL6A3P12111 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.03■□□□□ 0.64
COL6A3P12111 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC19.03■□□□□ 0.64
COL6A3P12111 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A3P12111 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.03■□□□□ 0.64
COL6A3P12111 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A3P12111 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.03■□□□□ 0.64
COL6A3P12111 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A3P12111 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A3P12111 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC19.03■□□□□ 0.64
COL6A3P12111 RN7SL692P-201ENST00000464677 288 ntBASIC19.03■□□□□ 0.64
COL6A3P12111 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC19.03■□□□□ 0.64
COL6A3P12111 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC19.03■□□□□ 0.64
COL6A3P12111 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC19.03■□□□□ 0.64
COL6A3P12111 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL6A3P12111 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A3P12111 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A3P12111 AC006504.4-201ENST00000592118 1568 ntBASIC19.03■□□□□ 0.64
COL6A3P12111 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
COL6A3P12111 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC19.03■□□□□ 0.64
COL6A3P12111 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.03■□□□□ 0.64
COL6A3P12111 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A3P12111 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
COL6A3P12111 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.02■□□□□ 0.64
COL6A3P12111 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A3P12111 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.02■□□□□ 0.64
COL6A3P12111 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.02■□□□□ 0.64
COL6A3P12111 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.02■□□□□ 0.64
COL6A3P12111 IGHV3-71-201ENST00000523324 359 ntBASIC19.02■□□□□ 0.64
COL6A3P12111 MIR4525-201ENST00000580000 75 ntBASIC19.02■□□□□ 0.64
COL6A3P12111 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A3P12111 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A3P12111 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A3P12111 AC092667.1-201ENST00000434301 2586 ntBASIC19.02■□□□□ 0.64
COL6A3P12111 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A3P12111 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.02■□□□□ 0.64
COL6A3P12111 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
COL6A3P12111 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC19.02■□□□□ 0.63
COL6A3P12111 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A3P12111 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A3P12111 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A3P12111 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.02■□□□□ 0.63
COL6A3P12111 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
COL6A3P12111 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A3P12111 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A3P12111 BASP1P1-201ENST00000430708 665 ntBASIC19.01■□□□□ 0.63
COL6A3P12111 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A3P12111 AC073592.4-201ENST00000623827 446 ntBASIC19.01■□□□□ 0.63
COL6A3P12111 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A3P12111 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.01■□□□□ 0.63
COL6A3P12111 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A3P12111 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A3P12111 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.01■□□□□ 0.63
COL6A3P12111 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A3P12111 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL6A3P12111 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL6A3P12111 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
COL6A3P12111 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A3P12111 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A3P12111 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.01■□□□□ 0.63
COL6A3P12111 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.01■□□□□ 0.63
COL6A3P12111 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A3P12111 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL6A3P12111 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.01■□□□□ 0.63
COL6A3P12111 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A3P12111 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC19.01■□□□□ 0.63
COL6A3P12111 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC19.01■□□□□ 0.63
COL6A3P12111 AC004877.2-201ENST00000623941 599 ntBASIC19.01■□□□□ 0.63
COL6A3P12111 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19■□□□□ 0.63
COL6A3P12111 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
COL6A3P12111 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
COL6A3P12111 HNRNPFP1-201ENST00000391730 1133 ntBASIC19■□□□□ 0.63
COL6A3P12111 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL6A3P12111 ADH5P3-201ENST00000433842 1137 ntBASIC19■□□□□ 0.63
COL6A3P12111 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19■□□□□ 0.63
COL6A3P12111 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19■□□□□ 0.63
COL6A3P12111 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
COL6A3P12111 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL6A3P12111 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A3P12111 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A3P12111 CYP51A1P1-201ENST00000492267 1507 ntBASIC19■□□□□ 0.63
COL6A3P12111 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19■□□□□ 0.63
COL6A3P12111 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
COL6A3P12111 GOLGA6L11P-201ENST00000417252 1298 ntBASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms