Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LDLRP01130 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.75■□□□□ 0.43
LDLRP01130 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LDLRP01130 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
LDLRP01130 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.75■□□□□ 0.43
LDLRP01130 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.75■□□□□ 0.43
LDLRP01130 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LDLRP01130 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.74■□□□□ 0.43
LDLRP01130 PKD1P1-201ENST00000458669 6805 ntBASIC17.74■□□□□ 0.43
LDLRP01130 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
LDLRP01130 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
LDLRP01130 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.74■□□□□ 0.43
LDLRP01130 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 NIFKP9-201ENST00000419265 221 ntBASIC17.74■□□□□ 0.43
LDLRP01130 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.74■□□□□ 0.43
LDLRP01130 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
LDLRP01130 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.74■□□□□ 0.43
LDLRP01130 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.74■□□□□ 0.43
LDLRP01130 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.74■□□□□ 0.43
LDLRP01130 KRT126P-201ENST00000549467 1181 ntBASIC17.74■□□□□ 0.43
LDLRP01130 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.74■□□□□ 0.43
LDLRP01130 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.74■□□□□ 0.43
LDLRP01130 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
LDLRP01130 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
LDLRP01130 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.74■□□□□ 0.43
LDLRP01130 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.74■□□□□ 0.43
LDLRP01130 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.74■□□□□ 0.43
LDLRP01130 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LDLRP01130 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
LDLRP01130 KRT16P1-201ENST00000399124 1418 ntBASIC17.73■□□□□ 0.43
LDLRP01130 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.73■□□□□ 0.43
LDLRP01130 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.73■□□□□ 0.43
LDLRP01130 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.73■□□□□ 0.43
LDLRP01130 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.73■□□□□ 0.43
LDLRP01130 LINC01238-205ENST00000567549 1107 ntBASIC17.73■□□□□ 0.43
LDLRP01130 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
LDLRP01130 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.73■□□□□ 0.43
LDLRP01130 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
LDLRP01130 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LDLRP01130 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 KRT8P8-201ENST00000434750 1448 ntBASIC17.72■□□□□ 0.43
LDLRP01130 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 ESPNP-201ENST00000270691 2015 ntBASIC17.72■□□□□ 0.43
LDLRP01130 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.72■□□□□ 0.43
LDLRP01130 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.72■□□□□ 0.43
LDLRP01130 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.72■□□□□ 0.43
LDLRP01130 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LDLRP01130 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms