Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 MIR935-201ENST00000401179 91 ntBASIC18.38■□□□□ 0.53
SHOX2O60902 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 AC073210.2-201ENST00000430369 194 ntBASIC18.38■□□□□ 0.53
SHOX2O60902 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.38■□□□□ 0.53
SHOX2O60902 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.38■□□□□ 0.53
SHOX2O60902 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.38■□□□□ 0.53
SHOX2O60902 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.38■□□□□ 0.53
SHOX2O60902 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.38■□□□□ 0.53
SHOX2O60902 AC026691.1-201ENST00000602502 2017 ntBASIC18.38■□□□□ 0.53
SHOX2O60902 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
SHOX2O60902 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.38■□□□□ 0.53
SHOX2O60902 GMCL1P1-201ENST00000463439 1581 ntBASIC18.38■□□□□ 0.53
SHOX2O60902 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
SHOX2O60902 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHOX2O60902 PCDHB17P-201ENST00000539533 2393 ntBASIC18.38■□□□□ 0.53
SHOX2O60902 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SHOX2O60902 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.37■□□□□ 0.53
SHOX2O60902 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.37■□□□□ 0.53
SHOX2O60902 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.37■□□□□ 0.53
SHOX2O60902 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SHOX2O60902 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SHOX2O60902 AC034268.1-201ENST00000441047 882 ntBASIC18.37■□□□□ 0.53
SHOX2O60902 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.37■□□□□ 0.53
SHOX2O60902 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SHOX2O60902 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SHOX2O60902 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SHOX2O60902 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 AL603756.1-201ENST00000606511 2163 ntBASIC18.37■□□□□ 0.53
SHOX2O60902 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.37■□□□□ 0.53
SHOX2O60902 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHOX2O60902 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.37■□□□□ 0.53
SHOX2O60902 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHOX2O60902 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.36■□□□□ 0.53
SHOX2O60902 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHOX2O60902 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHOX2O60902 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.36■□□□□ 0.53
SHOX2O60902 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHOX2O60902 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.36■□□□□ 0.53
SHOX2O60902 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SHOX2O60902 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.36■□□□□ 0.53
SHOX2O60902 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
SHOX2O60902 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.36■□□□□ 0.53
SHOX2O60902 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.36■□□□□ 0.53
SHOX2O60902 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHOX2O60902 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.36■□□□□ 0.53
SHOX2O60902 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.36■□□□□ 0.53
SHOX2O60902 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.36■□□□□ 0.53
SHOX2O60902 AC137761.2-201ENST00000561729 223 ntBASIC18.36■□□□□ 0.53
SHOX2O60902 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHOX2O60902 AC145350.3-201ENST00000569033 163 ntBASIC18.36■□□□□ 0.53
SHOX2O60902 AC087623.3-201ENST00000607047 1098 ntBASIC18.36■□□□□ 0.53
SHOX2O60902 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
SHOX2O60902 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SHOX2O60902 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SHOX2O60902 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHOX2O60902 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SHOX2O60902 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SHOX2O60902 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.35■□□□□ 0.53
SHOX2O60902 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.35■□□□□ 0.53
SHOX2O60902 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SHOX2O60902 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SHOX2O60902 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.35■□□□□ 0.53
SHOX2O60902 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 GPX1P1-201ENST00000388829 606 ntBASIC18.35■□□□□ 0.53
SHOX2O60902 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SHOX2O60902 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.35■□□□□ 0.53
SHOX2O60902 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms