Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 ESPNP-201ENST00000270691 2015 ntBASIC16.15■□□□□ 0.18
LMX1BO60663 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 KRT8P45-201ENST00000414328 1447 ntBASIC16.15■□□□□ 0.18
LMX1BO60663 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.15■□□□□ 0.18
LMX1BO60663 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
LMX1BO60663 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.15■□□□□ 0.18
LMX1BO60663 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.15■□□□□ 0.18
LMX1BO60663 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.15■□□□□ 0.18
LMX1BO60663 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 AC099343.3-201ENST00000605834 2503 ntBASIC16.15■□□□□ 0.18
LMX1BO60663 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC16.15■□□□□ 0.18
LMX1BO60663 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LMX1BO60663 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
LMX1BO60663 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
LMX1BO60663 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.18
LMX1BO60663 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1BO60663 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1BO60663 AC008764.6-201ENST00000595909 2069 ntBASIC16.14■□□□□ 0.17
LMX1BO60663 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1BO60663 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.14■□□□□ 0.17
LMX1BO60663 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1BO60663 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1BO60663 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC16.14■□□□□ 0.17
LMX1BO60663 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.14■□□□□ 0.17
LMX1BO60663 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.14■□□□□ 0.17
LMX1BO60663 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.14■□□□□ 0.17
LMX1BO60663 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.14■□□□□ 0.17
LMX1BO60663 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.14■□□□□ 0.17
LMX1BO60663 AC091076.1-201ENST00000610741 619 ntBASIC16.14■□□□□ 0.17
LMX1BO60663 AC008622.2-201ENST00000617006 1229 ntBASIC16.14■□□□□ 0.17
LMX1BO60663 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1BO60663 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC16.14■□□□□ 0.17
LMX1BO60663 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.14■□□□□ 0.17
LMX1BO60663 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1BO60663 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1BO60663 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1BO60663 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LMX1BO60663 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.13■□□□□ 0.17
LMX1BO60663 LTB4R2-202ENST00000528054 3092 ntBASIC16.13■□□□□ 0.17
LMX1BO60663 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LMX1BO60663 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 AC112777.1-201ENST00000540175 1423 ntBASIC16.13■□□□□ 0.17
LMX1BO60663 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.13■□□□□ 0.17
LMX1BO60663 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 AC008556.1-201ENST00000610908 2040 ntBASIC16.13■□□□□ 0.17
LMX1BO60663 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 FAM207BP-201ENST00000447172 505 ntBASIC16.13■□□□□ 0.17
LMX1BO60663 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.13■□□□□ 0.17
LMX1BO60663 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.13■□□□□ 0.17
LMX1BO60663 AC022616.7-201ENST00000525383 220 ntBASIC16.13■□□□□ 0.17
LMX1BO60663 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.13■□□□□ 0.17
LMX1BO60663 SLC25A1P4-201ENST00000567977 778 ntBASIC16.13■□□□□ 0.17
LMX1BO60663 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 AC130371.2-201ENST00000619443 611 ntBASIC16.13■□□□□ 0.17
LMX1BO60663 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.13■□□□□ 0.17
LMX1BO60663 AC093677.2-201ENST00000600169 1863 ntBASIC16.13■□□□□ 0.17
LMX1BO60663 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.13■□□□□ 0.17
LMX1BO60663 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
LMX1BO60663 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.13■□□□□ 0.17
LMX1BO60663 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.13■□□□□ 0.17
LMX1BO60663 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.13■□□□□ 0.17
LMX1BO60663 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.13■□□□□ 0.17
LMX1BO60663 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LMX1BO60663 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.13■□□□□ 0.17
LMX1BO60663 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
LMX1BO60663 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LMX1BO60663 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms