Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 TSPY7P-201ENST00000431358 1114 ntBASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 AP003041.3-201ENST00000527151 707 ntBASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 FITM1-202ENST00000559294 800 ntBASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 KRT8P7-201ENST00000533003 1432 ntBASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
HIF3AQ9Y2N7 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 CCR12P-201ENST00000446203 998 ntBASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 WWOX-216ENST00000569818 525 ntBASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 TMEM191A-211ENST00000637163 1067 ntBASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 AC092338.2-201ENST00000568827 1415 ntBASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 AL133373.2-201ENST00000623187 2828 ntBASIC16.6■□□□□ 0.25
HIF3AQ9Y2N7 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 AL163051.1-201ENST00000569214 1512 ntBASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 GMCL1P1-201ENST00000463439 1581 ntBASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HIF3AQ9Y2N7 AC068880.1-201ENST00000507289 2297 ntBASIC16.58■□□□□ 0.25
HIF3AQ9Y2N7 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
HIF3AQ9Y2N7 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
HIF3AQ9Y2N7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.58■□□□□ 0.24
HIF3AQ9Y2N7 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms