Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 KRT8P9-201ENST00000558927 1449 ntBASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.28■□□□□ 0.52
VPS9D1Q9Y2B5 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 AC093677.2-201ENST00000600169 1863 ntBASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 AKR1B10P2-201ENST00000577332 927 ntBASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 FAM87A-204ENST00000613235 858 ntBASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.27■□□□□ 0.52
VPS9D1Q9Y2B5 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
VPS9D1Q9Y2B5 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
VPS9D1Q9Y2B5 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.27■□□□□ 0.51
VPS9D1Q9Y2B5 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS9D1Q9Y2B5 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC18.27■□□□□ 0.51
VPS9D1Q9Y2B5 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.51
VPS9D1Q9Y2B5 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
VPS9D1Q9Y2B5 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.27■□□□□ 0.51
VPS9D1Q9Y2B5 LINC01568-207ENST00000641790 1380 ntBASIC18.27■□□□□ 0.51
VPS9D1Q9Y2B5 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS9D1Q9Y2B5 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
VPS9D1Q9Y2B5 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 AC135776.1-201ENST00000319817 2481 ntBASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.26■□□□□ 0.51
VPS9D1Q9Y2B5 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 SDHAP2-201ENST00000455183 2001 ntBASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.25■□□□□ 0.51
VPS9D1Q9Y2B5 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms