Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
DDX41Q9UJV9 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 AC079602.3-201ENST00000623931 403 ntBASIC21.11■□□□□ 0.97
DDX41Q9UJV9 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
DDX41Q9UJV9 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 KRT8P32-201ENST00000512863 1461 ntBASIC21.1■□□□□ 0.97
DDX41Q9UJV9 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 AL645929.1-201ENST00000420084 975 ntBASIC21.1■□□□□ 0.97
DDX41Q9UJV9 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 KRT18P48-201ENST00000434763 852 ntBASIC21.1■□□□□ 0.97
DDX41Q9UJV9 HCG4P8-203ENST00000443049 980 ntBASIC21.1■□□□□ 0.97
DDX41Q9UJV9 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 MIR3917-201ENST00000580971 93 ntBASIC21.1■□□□□ 0.97
DDX41Q9UJV9 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.1■□□□□ 0.97
DDX41Q9UJV9 AL157888.1-201ENST00000631930 593 ntBASIC21.1■□□□□ 0.97
DDX41Q9UJV9 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.1■□□□□ 0.97
DDX41Q9UJV9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 AC141586.3-201ENST00000562166 1838 ntBASIC21.09■□□□□ 0.97
DDX41Q9UJV9 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX41Q9UJV9 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms