Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC21.04■□□□□ 0.96
USP28Q96RU2 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
USP28Q96RU2 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC21.04■□□□□ 0.96
USP28Q96RU2 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP28Q96RU2 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
USP28Q96RU2 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP28Q96RU2 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
USP28Q96RU2 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP28Q96RU2 AC009102.3-201ENST00000623118 1491 ntBASIC21.03■□□□□ 0.96
USP28Q96RU2 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP28Q96RU2 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC21.03■□□□□ 0.96
USP28Q96RU2 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
USP28Q96RU2 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
USP28Q96RU2 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.03■□□□□ 0.96
USP28Q96RU2 FITM1-202ENST00000559294 800 ntBASIC21.03■□□□□ 0.96
USP28Q96RU2 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP28Q96RU2 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
USP28Q96RU2 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.03■□□□□ 0.96
USP28Q96RU2 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.03■□□□□ 0.96
USP28Q96RU2 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.03■□□□□ 0.96
USP28Q96RU2 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
USP28Q96RU2 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
USP28Q96RU2 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.03■□□□□ 0.96
USP28Q96RU2 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.03■□□□□ 0.96
USP28Q96RU2 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP28Q96RU2 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP28Q96RU2 FLJ13224-201ENST00000313737 1514 ntBASIC21.03■□□□□ 0.96
USP28Q96RU2 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP28Q96RU2 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP28Q96RU2 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
USP28Q96RU2 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP28Q96RU2 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21.02■□□□□ 0.96
USP28Q96RU2 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP28Q96RU2 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP28Q96RU2 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP28Q96RU2 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.02■□□□□ 0.96
USP28Q96RU2 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP28Q96RU2 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
USP28Q96RU2 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP28Q96RU2 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
USP28Q96RU2 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.02■□□□□ 0.96
USP28Q96RU2 MIR149-201ENST00000384879 89 ntBASIC21.02■□□□□ 0.96
USP28Q96RU2 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.02■□□□□ 0.96
USP28Q96RU2 KRT18P23-201ENST00000435622 1283 ntBASIC21.02■□□□□ 0.96
USP28Q96RU2 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.02■□□□□ 0.96
USP28Q96RU2 WWOX-216ENST00000569818 525 ntBASIC21.02■□□□□ 0.96
USP28Q96RU2 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP28Q96RU2 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP28Q96RU2 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP28Q96RU2 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP28Q96RU2 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP28Q96RU2 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.02■□□□□ 0.96
USP28Q96RU2 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP28Q96RU2 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
USP28Q96RU2 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
USP28Q96RU2 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.95
USP28Q96RU2 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.01■□□□□ 0.95
USP28Q96RU2 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP28Q96RU2 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.01■□□□□ 0.95
USP28Q96RU2 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP28Q96RU2 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.01■□□□□ 0.95
USP28Q96RU2 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP28Q96RU2 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP28Q96RU2 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
USP28Q96RU2 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC21.01■□□□□ 0.95
USP28Q96RU2 STK4-201ENST00000372801 2038 ntTSL 2 BASIC21.01■□□□□ 0.95
USP28Q96RU2 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP28Q96RU2 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
USP28Q96RU2 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.01■□□□□ 0.95
USP28Q96RU2 TSPY17P-201ENST00000450329 467 ntBASIC21.01■□□□□ 0.95
USP28Q96RU2 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
USP28Q96RU2 MIR4785-201ENST00000585005 73 ntBASIC21.01■□□□□ 0.95
USP28Q96RU2 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP28Q96RU2 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP28Q96RU2 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
USP28Q96RU2 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP28Q96RU2 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP28Q96RU2 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
USP28Q96RU2 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21■□□□□ 0.95
USP28Q96RU2 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP28Q96RU2 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP28Q96RU2 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
USP28Q96RU2 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21■□□□□ 0.95
USP28Q96RU2 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
USP28Q96RU2 SLC25A6P5-201ENST00000435663 894 ntBASIC21■□□□□ 0.95
USP28Q96RU2 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21■□□□□ 0.95
USP28Q96RU2 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21■□□□□ 0.95
USP28Q96RU2 AL355075.4-201ENST00000554988 638 ntBASIC21■□□□□ 0.95
USP28Q96RU2 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21■□□□□ 0.95
USP28Q96RU2 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
USP28Q96RU2 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21■□□□□ 0.95
USP28Q96RU2 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
USP28Q96RU2 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms