Protein–RNA interactions for Protein: Q96NU0

CNTNAP3B, Contactin-associated protein-like 3B, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTNAP3BQ96NU0 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 TREX1-205ENST00000625293 1783 ntBASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTNAP3BQ96NU0 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 IGHGP-201ENST00000390555 1178 ntBASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 GAPDHP21-201ENST00000450301 1010 ntBASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 Z92544.3-201ENST00000624747 417 ntBASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.52■□□□□ 0.4
CNTNAP3BQ96NU0 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CNTNAP3BQ96NU0 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CNTNAP3BQ96NU0 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CNTNAP3BQ96NU0 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CNTNAP3BQ96NU0 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CNTNAP3BQ96NU0 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.52■□□□□ 0.39
CNTNAP3BQ96NU0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.52■□□□□ 0.39
CNTNAP3BQ96NU0 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CNTNAP3BQ96NU0 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CNTNAP3BQ96NU0 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CNTNAP3BQ96NU0 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.5■□□□□ 0.39
CNTNAP3BQ96NU0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms