Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB4Q8WW32 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 AFG3L1P-217ENST00000557444 2447 ntBASIC18.4■□□□□ 0.54
HMGB4Q8WW32 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 POM121L3P-201ENST00000419331 1163 ntBASIC18.4■□□□□ 0.54
HMGB4Q8WW32 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 BNIP3P18-201ENST00000593976 575 ntBASIC18.4■□□□□ 0.54
HMGB4Q8WW32 AC064862.7-201ENST00000604520 867 ntBASIC18.4■□□□□ 0.54
HMGB4Q8WW32 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
HMGB4Q8WW32 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.39■□□□□ 0.54
HMGB4Q8WW32 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HMGB4Q8WW32 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.39■□□□□ 0.54
HMGB4Q8WW32 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HMGB4Q8WW32 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 BX640515.1-201ENST00000617215 977 ntBASIC18.39■□□□□ 0.53
HMGB4Q8WW32 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 AC093484.2-201ENST00000580996 2166 ntBASIC18.39■□□□□ 0.53
HMGB4Q8WW32 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
HMGB4Q8WW32 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 FAM197Y8-203ENST00000450145 560 ntBASIC18.38■□□□□ 0.53
HMGB4Q8WW32 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 KRT18P41-201ENST00000518924 1277 ntBASIC18.38■□□□□ 0.53
HMGB4Q8WW32 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 AP001005.1-201ENST00000571755 1248 ntBASIC18.38■□□□□ 0.53
HMGB4Q8WW32 MIR5100-201ENST00000579544 119 ntBASIC18.38■□□□□ 0.53
HMGB4Q8WW32 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGB4Q8WW32 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB4Q8WW32 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB4Q8WW32 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HMGB4Q8WW32 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms