Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 MIR662-201ENST00000384847 95 ntBASIC17.05■□□□□ 0.32
BEST3Q8N1M1 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 AC092119.3-201ENST00000612618 583 ntBASIC17.05■□□□□ 0.32
BEST3Q8N1M1 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.05■□□□□ 0.32
BEST3Q8N1M1 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
BEST3Q8N1M1 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 AC093525.10-201ENST00000625130 1569 ntBASIC17.04■□□□□ 0.32
BEST3Q8N1M1 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 TSSC2-201ENST00000450217 709 ntBASIC17.04■□□□□ 0.32
BEST3Q8N1M1 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 AL121672.3-201ENST00000608644 468 ntBASIC17.04■□□□□ 0.32
BEST3Q8N1M1 NPAP1P7-201ENST00000613027 823 ntBASIC17.04■□□□□ 0.32
BEST3Q8N1M1 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 MTMR9LP-203ENST00000426597 1545 ntBASIC17.04■□□□□ 0.32
BEST3Q8N1M1 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
BEST3Q8N1M1 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 MIR3180-4-201ENST00000582223 153 ntBASIC17.03■□□□□ 0.32
BEST3Q8N1M1 CLEC4GP1-201ENST00000596555 870 ntBASIC17.03■□□□□ 0.32
BEST3Q8N1M1 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
BEST3Q8N1M1 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.03■□□□□ 0.32
BEST3Q8N1M1 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms