Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.36■□□□□ 0.53
LDB1Q86U70 AL163051.1-201ENST00000569214 1512 ntBASIC18.36■□□□□ 0.53
LDB1Q86U70 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.36■□□□□ 0.53
LDB1Q86U70 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.36■□□□□ 0.53
LDB1Q86U70 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LDB1Q86U70 AC093677.2-201ENST00000600169 1863 ntBASIC18.36■□□□□ 0.53
LDB1Q86U70 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LDB1Q86U70 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
LDB1Q86U70 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDB1Q86U70 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LDB1Q86U70 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LDB1Q86U70 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
LDB1Q86U70 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 SDHAP2-201ENST00000455183 2001 ntBASIC18.35■□□□□ 0.53
LDB1Q86U70 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.35■□□□□ 0.53
LDB1Q86U70 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 HOXB1-202ENST00000577092 1414 ntBASIC18.35■□□□□ 0.53
LDB1Q86U70 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.35■□□□□ 0.53
LDB1Q86U70 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.35■□□□□ 0.53
LDB1Q86U70 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
LDB1Q86U70 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.35■□□□□ 0.53
LDB1Q86U70 AC112497.1-201ENST00000624824 639 ntBASIC18.35■□□□□ 0.53
LDB1Q86U70 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.35■□□□□ 0.53
LDB1Q86U70 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.35■□□□□ 0.53
LDB1Q86U70 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.35■□□□□ 0.53
LDB1Q86U70 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 AC005332.8-201ENST00000622750 2735 ntBASIC18.35■□□□□ 0.53
LDB1Q86U70 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.35■□□□□ 0.53
LDB1Q86U70 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB1Q86U70 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.35■□□□□ 0.53
LDB1Q86U70 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB1Q86U70 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDB1Q86U70 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB1Q86U70 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.34■□□□□ 0.53
LDB1Q86U70 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDB1Q86U70 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDB1Q86U70 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDB1Q86U70 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LDB1Q86U70 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB1Q86U70 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LDB1Q86U70 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
LDB1Q86U70 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDB1Q86U70 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.34■□□□□ 0.53
LDB1Q86U70 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.34■□□□□ 0.53
LDB1Q86U70 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.34■□□□□ 0.53
LDB1Q86U70 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LDB1Q86U70 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
LDB1Q86U70 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.34■□□□□ 0.53
LDB1Q86U70 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LDB1Q86U70 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB1Q86U70 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDB1Q86U70 NOC2LP1-202ENST00000452600 2235 ntBASIC18.34■□□□□ 0.53
LDB1Q86U70 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.34■□□□□ 0.53
LDB1Q86U70 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB1Q86U70 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.34■□□□□ 0.53
LDB1Q86U70 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.34■□□□□ 0.53
LDB1Q86U70 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LDB1Q86U70 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDB1Q86U70 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LDB1Q86U70 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LDB1Q86U70 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
LDB1Q86U70 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDB1Q86U70 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.33■□□□□ 0.53
LDB1Q86U70 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDB1Q86U70 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDB1Q86U70 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
LDB1Q86U70 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LDB1Q86U70 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LDB1Q86U70 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDB1Q86U70 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
LDB1Q86U70 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDB1Q86U70 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.33■□□□□ 0.52
LDB1Q86U70 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDB1Q86U70 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDB1Q86U70 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.33■□□□□ 0.52
LDB1Q86U70 HMGA1P5-201ENST00000412453 271 ntBASIC18.33■□□□□ 0.52
LDB1Q86U70 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDB1Q86U70 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LDB1Q86U70 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.33■□□□□ 0.52
LDB1Q86U70 AC024243.1-201ENST00000609234 778 ntBASIC18.33■□□□□ 0.52
LDB1Q86U70 AC133561.5-201ENST00000635547 218 ntBASIC18.33■□□□□ 0.52
LDB1Q86U70 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.33■□□□□ 0.52
LDB1Q86U70 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDB1Q86U70 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms