Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.85■□□□□ 0.77
KRT39Q6A163 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.85■□□□□ 0.77
KRT39Q6A163 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.85■□□□□ 0.77
KRT39Q6A163 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
KRT39Q6A163 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.85■□□□□ 0.77
KRT39Q6A163 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.85■□□□□ 0.77
KRT39Q6A163 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
KRT39Q6A163 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
KRT39Q6A163 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
KRT39Q6A163 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
KRT39Q6A163 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
KRT39Q6A163 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.85■□□□□ 0.77
KRT39Q6A163 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.85■□□□□ 0.77
KRT39Q6A163 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
KRT39Q6A163 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.85■□□□□ 0.77
KRT39Q6A163 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
KRT39Q6A163 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.84■□□□□ 0.77
KRT39Q6A163 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
KRT39Q6A163 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
KRT39Q6A163 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.84■□□□□ 0.77
KRT39Q6A163 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
KRT39Q6A163 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
KRT39Q6A163 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
KRT39Q6A163 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
KRT39Q6A163 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
KRT39Q6A163 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
KRT39Q6A163 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.84■□□□□ 0.77
KRT39Q6A163 KRT18P57-201ENST00000443599 1254 ntBASIC19.84■□□□□ 0.77
KRT39Q6A163 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
KRT39Q6A163 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
KRT39Q6A163 AL441883.1-201ENST00000566170 1045 ntBASIC19.84■□□□□ 0.77
KRT39Q6A163 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.84■□□□□ 0.77
KRT39Q6A163 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.84■□□□□ 0.77
KRT39Q6A163 AL390961.4-201ENST00000623958 2535 ntBASIC19.84■□□□□ 0.77
KRT39Q6A163 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
KRT39Q6A163 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
KRT39Q6A163 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
KRT39Q6A163 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.84■□□□□ 0.77
KRT39Q6A163 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
KRT39Q6A163 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
KRT39Q6A163 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
KRT39Q6A163 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
KRT39Q6A163 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
KRT39Q6A163 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
KRT39Q6A163 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
KRT39Q6A163 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
KRT39Q6A163 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
KRT39Q6A163 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.83■□□□□ 0.77
KRT39Q6A163 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
KRT39Q6A163 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
KRT39Q6A163 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
KRT39Q6A163 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
KRT39Q6A163 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.83■□□□□ 0.77
KRT39Q6A163 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.83■□□□□ 0.77
KRT39Q6A163 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.83■□□□□ 0.77
KRT39Q6A163 AC139887.4-201ENST00000607877 719 ntBASIC19.83■□□□□ 0.77
KRT39Q6A163 AC011558.1-201ENST00000623459 338 ntBASIC19.83■□□□□ 0.77
KRT39Q6A163 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
KRT39Q6A163 AL157888.1-201ENST00000631930 593 ntBASIC19.83■□□□□ 0.77
KRT39Q6A163 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
KRT39Q6A163 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
KRT39Q6A163 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
KRT39Q6A163 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
KRT39Q6A163 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
KRT39Q6A163 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
KRT39Q6A163 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
KRT39Q6A163 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
KRT39Q6A163 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.83■□□□□ 0.76
KRT39Q6A163 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
KRT39Q6A163 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.83■□□□□ 0.76
KRT39Q6A163 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
KRT39Q6A163 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
KRT39Q6A163 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
KRT39Q6A163 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 AC117947.1-201ENST00000427448 529 ntBASIC19.82■□□□□ 0.76
KRT39Q6A163 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.82■□□□□ 0.76
KRT39Q6A163 YBX1P2-201ENST00000489612 999 ntBASIC19.82■□□□□ 0.76
KRT39Q6A163 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.82■□□□□ 0.76
KRT39Q6A163 AC034232.1-201ENST00000506026 1064 ntBASIC19.82■□□□□ 0.76
KRT39Q6A163 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.82■□□□□ 0.76
KRT39Q6A163 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.82■□□□□ 0.76
KRT39Q6A163 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.82■□□□□ 0.76
KRT39Q6A163 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.82■□□□□ 0.76
KRT39Q6A163 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.82■□□□□ 0.76
KRT39Q6A163 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.82■□□□□ 0.76
KRT39Q6A163 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
KRT39Q6A163 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
KRT39Q6A163 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
KRT39Q6A163 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.82■□□□□ 0.76
KRT39Q6A163 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms