Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CCDC74BP1-201ENST00000508880 1123 ntBASIC19.42■□□□□ 0.7
CHD9Q3L8U1 AC005829.1-201ENST00000570002 483 ntBASIC19.42■□□□□ 0.7
CHD9Q3L8U1 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CHD9Q3L8U1 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 AC105339.3-201ENST00000560043 636 ntBASIC19.41■□□□□ 0.7
CHD9Q3L8U1 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 AL139400.1-201ENST00000366220 510 ntBASIC19.41■□□□□ 0.7
CHD9Q3L8U1 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 KRT18P2-201ENST00000447938 1258 ntBASIC19.41■□□□□ 0.7
CHD9Q3L8U1 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CHD9Q3L8U1 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 PNMT-202ENST00000394246 821 ntTSL 2 BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CHD9Q3L8U1 AC002310.6-201ENST00000624451 1377 ntBASIC19.39■□□□□ 0.7
CHD9Q3L8U1 AC073621.1-201ENST00000392730 636 ntBASIC19.39■□□□□ 0.7
CHD9Q3L8U1 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.39■□□□□ 0.7
CHD9Q3L8U1 AC068472.1-201ENST00000474589 881 ntBASIC19.39■□□□□ 0.7
CHD9Q3L8U1 AL096865.1-201ENST00000606796 927 ntBASIC19.39■□□□□ 0.7
CHD9Q3L8U1 AC073592.4-201ENST00000623827 446 ntBASIC19.39■□□□□ 0.7
CHD9Q3L8U1 AC092865.6-201ENST00000642101 219 ntBASIC19.39■□□□□ 0.7
CHD9Q3L8U1 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CHD9Q3L8U1 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.39■□□□□ 0.69
CHD9Q3L8U1 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 AC254562.1-201ENST00000417586 456 ntBASIC19.39■□□□□ 0.69
CHD9Q3L8U1 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 AL078644.1-201ENST00000609881 752 ntBASIC19.39■□□□□ 0.69
CHD9Q3L8U1 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CHD9Q3L8U1 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 FP475955.4-201ENST00000623131 1990 ntBASIC19.38■□□□□ 0.69
CHD9Q3L8U1 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 AC108751.1-201ENST00000490852 363 ntBASIC19.38■□□□□ 0.69
CHD9Q3L8U1 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 C20orf181-201ENST00000623918 480 ntBASIC19.38■□□□□ 0.69
CHD9Q3L8U1 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CHD9Q3L8U1 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms