Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.22■□□□□ 0.83
PEX3P56589 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.22■□□□□ 0.83
PEX3P56589 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.22■□□□□ 0.83
PEX3P56589 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PEX3P56589 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 AL136038.3-201ENST00000561909 1096 ntBASIC20.22■□□□□ 0.83
PEX3P56589 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.22■□□□□ 0.83
PEX3P56589 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.22■□□□□ 0.83
PEX3P56589 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
PEX3P56589 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.22■□□□□ 0.83
PEX3P56589 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
PEX3P56589 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.22■□□□□ 0.83
PEX3P56589 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.22■□□□□ 0.83
PEX3P56589 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.22■□□□□ 0.83
PEX3P56589 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.22■□□□□ 0.83
PEX3P56589 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 AC005332.1-201ENST00000577698 1310 ntBASIC20.22■□□□□ 0.83
PEX3P56589 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.22■□□□□ 0.83
PEX3P56589 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PEX3P56589 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC20.22■□□□□ 0.83
PEX3P56589 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PEX3P56589 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
PEX3P56589 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.21■□□□□ 0.83
PEX3P56589 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.21■□□□□ 0.83
PEX3P56589 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.21■□□□□ 0.83
PEX3P56589 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.21■□□□□ 0.83
PEX3P56589 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
PEX3P56589 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PEX3P56589 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
PEX3P56589 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PEX3P56589 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.2■□□□□ 0.82
PEX3P56589 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.2■□□□□ 0.82
PEX3P56589 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC20.2■□□□□ 0.82
PEX3P56589 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
PEX3P56589 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 MIR662-201ENST00000384847 95 ntBASIC20.2■□□□□ 0.82
PEX3P56589 PCED1CP-201ENST00000419887 785 ntBASIC20.2■□□□□ 0.82
PEX3P56589 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.2■□□□□ 0.82
PEX3P56589 AL358472.4-201ENST00000633140 710 ntBASIC20.2■□□□□ 0.82
PEX3P56589 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.2■□□□□ 0.82
PEX3P56589 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 AL024508.2-201ENST00000607749 1894 ntBASIC20.2■□□□□ 0.82
PEX3P56589 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PEX3P56589 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PEX3P56589 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
PEX3P56589 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PEX3P56589 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PEX3P56589 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PEX3P56589 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
PEX3P56589 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
PEX3P56589 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.19■□□□□ 0.82
PEX3P56589 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PEX3P56589 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
PEX3P56589 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PEX3P56589 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PEX3P56589 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PEX3P56589 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.19■□□□□ 0.82
PEX3P56589 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PEX3P56589 AL645929.1-201ENST00000420084 975 ntBASIC20.19■□□□□ 0.82
PEX3P56589 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.19■□□□□ 0.82
PEX3P56589 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.19■□□□□ 0.82
PEX3P56589 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.19■□□□□ 0.82
PEX3P56589 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC20.19■□□□□ 0.82
PEX3P56589 AC024563.2-201ENST00000603282 481 ntBASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms