Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.66■□□□□ 0.74
VCPP55072 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.66■□□□□ 0.74
VCPP55072 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.66■□□□□ 0.74
VCPP55072 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
VCPP55072 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
VCPP55072 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.66■□□□□ 0.74
VCPP55072 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
VCPP55072 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
VCPP55072 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.66■□□□□ 0.74
VCPP55072 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.66■□□□□ 0.74
VCPP55072 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.66■□□□□ 0.74
VCPP55072 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.66■□□□□ 0.74
VCPP55072 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
VCPP55072 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VCPP55072 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCPP55072 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.65■□□□□ 0.74
VCPP55072 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.65■□□□□ 0.74
VCPP55072 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
VCPP55072 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCPP55072 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCPP55072 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VCPP55072 AP002383.4-201ENST00000442518 975 ntBASIC19.65■□□□□ 0.74
VCPP55072 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.65■□□□□ 0.74
VCPP55072 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCPP55072 AC016734.2-201ENST00000624325 1377 ntBASIC19.65■□□□□ 0.74
VCPP55072 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCPP55072 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VCPP55072 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VCPP55072 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
VCPP55072 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VCPP55072 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.74
VCPP55072 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
VCPP55072 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
VCPP55072 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 HBZP1-201ENST00000354915 429 ntBASIC19.64■□□□□ 0.73
VCPP55072 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 NUS1P1-201ENST00000446295 882 ntBASIC19.64■□□□□ 0.73
VCPP55072 SLC25A6P4-201ENST00000586535 553 ntBASIC19.64■□□□□ 0.73
VCPP55072 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.64■□□□□ 0.73
VCPP55072 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.64■□□□□ 0.73
VCPP55072 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.64■□□□□ 0.73
VCPP55072 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.64■□□□□ 0.73
VCPP55072 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
VCPP55072 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.64■□□□□ 0.73
VCPP55072 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.64■□□□□ 0.73
VCPP55072 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
VCPP55072 AC090164.3-201ENST00000610780 2143 ntBASIC19.64■□□□□ 0.73
VCPP55072 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.64■□□□□ 0.73
VCPP55072 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VCPP55072 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.63■□□□□ 0.73
VCPP55072 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.63■□□□□ 0.73
VCPP55072 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.63■□□□□ 0.73
VCPP55072 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.63■□□□□ 0.73
VCPP55072 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VCPP55072 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.63■□□□□ 0.73
VCPP55072 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
VCPP55072 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.63■□□□□ 0.73
VCPP55072 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.63■□□□□ 0.73
VCPP55072 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
VCPP55072 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms