Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.46■□□□□ 0.55
PTPN4P29074 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.46■□□□□ 0.55
PTPN4P29074 AC104417.2-201ENST00000562989 1793 ntBASIC18.46■□□□□ 0.55
PTPN4P29074 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PTPN4P29074 TUBB8P6-201ENST00000436895 1288 ntBASIC18.46■□□□□ 0.55
PTPN4P29074 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.46■□□□□ 0.55
PTPN4P29074 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.46■□□□□ 0.55
PTPN4P29074 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.46■□□□□ 0.55
PTPN4P29074 KRT18P16-201ENST00000510337 1294 ntBASIC18.46■□□□□ 0.55
PTPN4P29074 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 PCDHA12-202ENST00000613593 2588 ntBASIC18.46■□□□□ 0.55
PTPN4P29074 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PTPN4P29074 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.46■□□□□ 0.55
PTPN4P29074 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.46■□□□□ 0.55
PTPN4P29074 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.46■□□□□ 0.55
PTPN4P29074 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTPN4P29074 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PTPN4P29074 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
PTPN4P29074 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
PTPN4P29074 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.45■□□□□ 0.54
PTPN4P29074 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.45■□□□□ 0.54
PTPN4P29074 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
PTPN4P29074 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
PTPN4P29074 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
PTPN4P29074 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.45■□□□□ 0.54
PTPN4P29074 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.45■□□□□ 0.54
PTPN4P29074 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.45■□□□□ 0.54
PTPN4P29074 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.45■□□□□ 0.54
PTPN4P29074 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
PTPN4P29074 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.45■□□□□ 0.54
PTPN4P29074 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
PTPN4P29074 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.45■□□□□ 0.54
PTPN4P29074 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
PTPN4P29074 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
PTPN4P29074 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 KRT18P22-201ENST00000402024 1347 ntBASIC18.45■□□□□ 0.54
PTPN4P29074 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 CYP2D8P-201ENST00000433633 1490 ntBASIC18.45■□□□□ 0.54
PTPN4P29074 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.45■□□□□ 0.54
PTPN4P29074 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTPN4P29074 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
PTPN4P29074 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.44■□□□□ 0.54
PTPN4P29074 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
PTPN4P29074 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
PTPN4P29074 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.44■□□□□ 0.54
PTPN4P29074 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.44■□□□□ 0.54
PTPN4P29074 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.44■□□□□ 0.54
PTPN4P29074 AC124067.4-201ENST00000519691 2379 ntBASIC18.44■□□□□ 0.54
PTPN4P29074 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.44■□□□□ 0.54
PTPN4P29074 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.44■□□□□ 0.54
PTPN4P29074 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.44■□□□□ 0.54
PTPN4P29074 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.44■□□□□ 0.54
PTPN4P29074 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.44■□□□□ 0.54
PTPN4P29074 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
PTPN4P29074 AC010947.1-201ENST00000623454 693 ntBASIC18.44■□□□□ 0.54
PTPN4P29074 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.44■□□□□ 0.54
PTPN4P29074 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
PTPN4P29074 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.44■□□□□ 0.54
PTPN4P29074 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTPN4P29074 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms