Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX1P28360 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX1P28360 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX1P28360 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
MSX1P28360 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.82■□□□□ 0.28
MSX1P28360 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.82■□□□□ 0.28
MSX1P28360 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
MSX1P28360 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 MIR149-201ENST00000384879 89 ntBASIC16.82■□□□□ 0.28
MSX1P28360 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.82■□□□□ 0.28
MSX1P28360 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
MSX1P28360 KRT18P38-201ENST00000449496 1282 ntBASIC16.82■□□□□ 0.28
MSX1P28360 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.82■□□□□ 0.28
MSX1P28360 GCSHP2-201ENST00000560971 527 ntBASIC16.82■□□□□ 0.28
MSX1P28360 AL136038.3-201ENST00000561909 1096 ntBASIC16.82■□□□□ 0.28
MSX1P28360 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.82■□□□□ 0.28
MSX1P28360 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.82■□□□□ 0.28
MSX1P28360 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.82■□□□□ 0.28
MSX1P28360 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC16.82■□□□□ 0.28
MSX1P28360 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.82■□□□□ 0.28
MSX1P28360 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.82■□□□□ 0.28
MSX1P28360 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSX1P28360 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
MSX1P28360 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.82■□□□□ 0.28
MSX1P28360 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
MSX1P28360 AL499627.1-201ENST00000569373 2188 ntBASIC16.81■□□□□ 0.28
MSX1P28360 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
MSX1P28360 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.81■□□□□ 0.28
MSX1P28360 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.81■□□□□ 0.28
MSX1P28360 VENTXP5-201ENST00000523979 775 ntBASIC16.81■□□□□ 0.28
MSX1P28360 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.81■□□□□ 0.28
MSX1P28360 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.81■□□□□ 0.28
MSX1P28360 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.81■□□□□ 0.28
MSX1P28360 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
MSX1P28360 AC090340.1-201ENST00000620778 4980 ntBASIC16.81■□□□□ 0.28
MSX1P28360 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.81■□□□□ 0.28
MSX1P28360 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC16.81■□□□□ 0.28
MSX1P28360 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
MSX1P28360 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
MSX1P28360 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSX1P28360 WIZP1-201ENST00000531444 2299 ntBASIC16.8■□□□□ 0.28
MSX1P28360 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX1P28360 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
MSX1P28360 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
MSX1P28360 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
MSX1P28360 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX1P28360 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
MSX1P28360 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSX1P28360 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.8■□□□□ 0.28
MSX1P28360 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX1P28360 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.8■□□□□ 0.28
MSX1P28360 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC16.8■□□□□ 0.28
MSX1P28360 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.8■□□□□ 0.28
MSX1P28360 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
MSX1P28360 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.8■□□□□ 0.28
MSX1P28360 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.8■□□□□ 0.28
MSX1P28360 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.8■□□□□ 0.28
MSX1P28360 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.8■□□□□ 0.28
MSX1P28360 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
MSX1P28360 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.8■□□□□ 0.28
MSX1P28360 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
MSX1P28360 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.8■□□□□ 0.28
MSX1P28360 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.8■□□□□ 0.28
MSX1P28360 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
MSX1P28360 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
MSX1P28360 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms