Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.31■□□□□ 0.84
MMP3P08254 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.31■□□□□ 0.84
MMP3P08254 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.31■□□□□ 0.84
MMP3P08254 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MMP3P08254 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MMP3P08254 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.31■□□□□ 0.84
MMP3P08254 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MMP3P08254 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MMP3P08254 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
MMP3P08254 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
MMP3P08254 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MMP3P08254 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
MMP3P08254 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MMP3P08254 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.31■□□□□ 0.84
MMP3P08254 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MMP3P08254 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
MMP3P08254 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
MMP3P08254 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.3■□□□□ 0.84
MMP3P08254 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.3■□□□□ 0.84
MMP3P08254 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.3■□□□□ 0.84
MMP3P08254 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
MMP3P08254 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MMP3P08254 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
MMP3P08254 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
MMP3P08254 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.3■□□□□ 0.84
MMP3P08254 RNA5SP419-201ENST00000515908 135 ntBASIC20.3■□□□□ 0.84
MMP3P08254 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.3■□□□□ 0.84
MMP3P08254 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.3■□□□□ 0.84
MMP3P08254 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.3■□□□□ 0.84
MMP3P08254 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MMP3P08254 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.3■□□□□ 0.84
MMP3P08254 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
MMP3P08254 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MMP3P08254 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
MMP3P08254 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.29■□□□□ 0.84
MMP3P08254 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
MMP3P08254 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MMP3P08254 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MMP3P08254 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.29■□□□□ 0.84
MMP3P08254 RCN1P2-201ENST00000398357 915 ntBASIC20.29■□□□□ 0.84
MMP3P08254 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
MMP3P08254 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.29■□□□□ 0.84
MMP3P08254 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.29■□□□□ 0.84
MMP3P08254 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.29■□□□□ 0.84
MMP3P08254 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC20.29■□□□□ 0.84
MMP3P08254 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.29■□□□□ 0.84
MMP3P08254 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC20.29■□□□□ 0.84
MMP3P08254 AC064862.7-201ENST00000604520 867 ntBASIC20.29■□□□□ 0.84
MMP3P08254 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MMP3P08254 AC120114.3-201ENST00000611923 658 ntBASIC20.29■□□□□ 0.84
MMP3P08254 AC009154.2-201ENST00000621177 724 ntBASIC20.29■□□□□ 0.84
MMP3P08254 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MMP3P08254 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MMP3P08254 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.29■□□□□ 0.84
MMP3P08254 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
MMP3P08254 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MMP3P08254 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.29■□□□□ 0.84
MMP3P08254 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MMP3P08254 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP3P08254 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
MMP3P08254 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP3P08254 LINC01126-201ENST00000623515 1646 ntBASIC20.28■□□□□ 0.84
MMP3P08254 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP3P08254 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
MMP3P08254 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP3P08254 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.28■□□□□ 0.84
MMP3P08254 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
MMP3P08254 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP3P08254 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP3P08254 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.28■□□□□ 0.84
MMP3P08254 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.28■□□□□ 0.84
MMP3P08254 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP3P08254 FAM197Y8-203ENST00000450145 560 ntBASIC20.28■□□□□ 0.84
MMP3P08254 AC132008.2-207ENST00000454517 770 ntBASIC20.28■□□□□ 0.84
MMP3P08254 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.28■□□□□ 0.84
MMP3P08254 BX640515.1-201ENST00000617215 977 ntBASIC20.28■□□□□ 0.84
MMP3P08254 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP3P08254 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.28■□□□□ 0.84
MMP3P08254 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP3P08254 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP3P08254 TP73-AS1-210ENST00000637775 1455 ntBASIC20.28■□□□□ 0.84
MMP3P08254 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP3P08254 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC20.28■□□□□ 0.84
MMP3P08254 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
MMP3P08254 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
MMP3P08254 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 LINC00602-201ENST00000629776 2065 ntBASIC20.27■□□□□ 0.84
MMP3P08254 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.27■□□□□ 0.84
MMP3P08254 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MMP3P08254 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
MMP3P08254 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms