Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 BAALC-202ENST00000306391 243 ntTSL 5 BASIC15.39■□□□□ 0.05
ABCA1O95477 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 BAALC-204ENST00000330955 222 ntTSL 5 BASIC15.39■□□□□ 0.05
ABCA1O95477 MIR574-201ENST00000385209 96 ntBASIC15.39■□□□□ 0.05
ABCA1O95477 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
ABCA1O95477 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.39■□□□□ 0.05
ABCA1O95477 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.39■□□□□ 0.05
ABCA1O95477 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.39■□□□□ 0.05
ABCA1O95477 Z69720.1-201ENST00000601483 472 ntBASIC15.39■□□□□ 0.05
ABCA1O95477 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
ABCA1O95477 LITAF-220ENST00000620789 692 ntTSL 5 BASIC15.39■□□□□ 0.05
ABCA1O95477 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.39■□□□□ 0.05
ABCA1O95477 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15.39■□□□□ 0.05
ABCA1O95477 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ABCA1O95477 TREX1-205ENST00000625293 1783 ntBASIC15.39■□□□□ 0.05
ABCA1O95477 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC15.39■□□□□ 0.05
ABCA1O95477 AC005332.7-201ENST00000614046 2005 ntBASIC15.39■□□□□ 0.05
ABCA1O95477 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
ABCA1O95477 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.38■□□□□ 0.05
ABCA1O95477 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC15.38■□□□□ 0.05
ABCA1O95477 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
ABCA1O95477 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
ABCA1O95477 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC15.38■□□□□ 0.05
ABCA1O95477 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
ABCA1O95477 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
ABCA1O95477 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
ABCA1O95477 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 KRT8P3-201ENST00000519669 1449 ntBASIC15.38■□□□□ 0.05
ABCA1O95477 HOXB1-202ENST00000577092 1414 ntBASIC15.38■□□□□ 0.05
ABCA1O95477 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
ABCA1O95477 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC15.38■□□□□ 0.05
ABCA1O95477 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
ABCA1O95477 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.38■□□□□ 0.05
ABCA1O95477 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.38■□□□□ 0.05
ABCA1O95477 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
ABCA1O95477 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.38■□□□□ 0.05
ABCA1O95477 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC15.38■□□□□ 0.05
ABCA1O95477 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
ABCA1O95477 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
ABCA1O95477 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
ABCA1O95477 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC15.38■□□□□ 0.05
ABCA1O95477 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.38■□□□□ 0.05
ABCA1O95477 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
ABCA1O95477 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC15.37■□□□□ 0.05
ABCA1O95477 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.37■□□□□ 0.05
ABCA1O95477 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 AL031284.1-201ENST00000419297 478 ntBASIC15.37■□□□□ 0.05
ABCA1O95477 AL590627.1-203ENST00000421194 1026 ntBASIC15.37■□□□□ 0.05
ABCA1O95477 KRT18P67-201ENST00000432816 1264 ntBASIC15.37■□□□□ 0.05
ABCA1O95477 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC15.37■□□□□ 0.05
ABCA1O95477 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.37■□□□□ 0.05
ABCA1O95477 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.37■□□□□ 0.05
ABCA1O95477 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC15.37■□□□□ 0.05
ABCA1O95477 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC15.37■□□□□ 0.05
ABCA1O95477 AC004408.2-201ENST00000623613 2777 ntBASIC15.37■□□□□ 0.05
ABCA1O95477 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC15.37■□□□□ 0.05
ABCA1O95477 AC098818.2-201ENST00000564925 2320 ntBASIC15.37■□□□□ 0.05
ABCA1O95477 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
ABCA1O95477 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
ABCA1O95477 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
ABCA1O95477 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC15.37■□□□□ 0.05
ABCA1O95477 AC091607.1-201ENST00000490318 1060 ntBASIC15.37■□□□□ 0.05
ABCA1O95477 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
ABCA1O95477 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms