Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.6■□□□□ 0.89
MSH4O15457 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
MSH4O15457 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
MSH4O15457 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
MSH4O15457 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 TSPY22P-201ENST00000427496 604 ntBASIC20.6■□□□□ 0.89
MSH4O15457 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.6■□□□□ 0.89
MSH4O15457 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.6■□□□□ 0.89
MSH4O15457 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.6■□□□□ 0.89
MSH4O15457 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.6■□□□□ 0.89
MSH4O15457 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
MSH4O15457 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MSH4O15457 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
MSH4O15457 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.59■□□□□ 0.89
MSH4O15457 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
MSH4O15457 AC016734.2-201ENST00000624325 1377 ntBASIC20.59■□□□□ 0.89
MSH4O15457 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
MSH4O15457 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.59■□□□□ 0.89
MSH4O15457 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.59■□□□□ 0.89
MSH4O15457 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.59■□□□□ 0.89
MSH4O15457 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.59■□□□□ 0.89
MSH4O15457 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.59■□□□□ 0.89
MSH4O15457 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.59■□□□□ 0.89
MSH4O15457 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.59■□□□□ 0.89
MSH4O15457 GPR32P1-201ENST00000601788 811 ntBASIC20.59■□□□□ 0.89
MSH4O15457 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 AC104581.1-202ENST00000635932 2618 ntBASIC20.59■□□□□ 0.89
MSH4O15457 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.59■□□□□ 0.89
MSH4O15457 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.59■□□□□ 0.89
MSH4O15457 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MSH4O15457 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH4O15457 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
MSH4O15457 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH4O15457 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
MSH4O15457 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH4O15457 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.58■□□□□ 0.89
MSH4O15457 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
MSH4O15457 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
MSH4O15457 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.89
MSH4O15457 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH4O15457 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
MSH4O15457 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
MSH4O15457 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.58■□□□□ 0.89
MSH4O15457 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
MSH4O15457 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.58■□□□□ 0.89
MSH4O15457 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
MSH4O15457 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.58■□□□□ 0.89
MSH4O15457 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
MSH4O15457 KRT8P26-201ENST00000534154 1276 ntBASIC20.58■□□□□ 0.89
MSH4O15457 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.58■□□□□ 0.89
MSH4O15457 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
MSH4O15457 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.58■□□□□ 0.89
MSH4O15457 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
MSH4O15457 AC069148.1-201ENST00000608741 768 ntBASIC20.58■□□□□ 0.89
MSH4O15457 AC004263.2-201ENST00000617183 678 ntBASIC20.58■□□□□ 0.89
MSH4O15457 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
MSH4O15457 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
MSH4O15457 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH4O15457 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH4O15457 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
MSH4O15457 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
MSH4O15457 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH4O15457 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
MSH4O15457 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.58■□□□□ 0.88
MSH4O15457 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH4O15457 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH4O15457 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH4O15457 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH4O15457 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.58■□□□□ 0.88
MSH4O15457 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH4O15457 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
MSH4O15457 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms