Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
NPHP1O15259 AL773604.1-201ENST00000617417 272 ntBASIC23.12■■□□□ 1.29
NPHP1O15259 AF228730.7-201ENST00000641842 219 ntBASIC23.12■■□□□ 1.29
NPHP1O15259 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
NPHP1O15259 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
NPHP1O15259 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP1O15259 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC23.11■■□□□ 1.29
NPHP1O15259 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC23.11■■□□□ 1.29
NPHP1O15259 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC23.11■■□□□ 1.29
NPHP1O15259 FP475955.4-201ENST00000623131 1990 ntBASIC23.11■■□□□ 1.29
NPHP1O15259 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP1O15259 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC23.11■■□□□ 1.29
NPHP1O15259 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP1O15259 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP1O15259 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP1O15259 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC23.11■■□□□ 1.29
NPHP1O15259 PMS2P1-201ENST00000431037 1228 ntBASIC23.11■■□□□ 1.29
NPHP1O15259 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC23.11■■□□□ 1.29
NPHP1O15259 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC23.11■■□□□ 1.29
NPHP1O15259 AL591684.3-201ENST00000605187 298 ntBASIC23.11■■□□□ 1.29
NPHP1O15259 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC23.11■■□□□ 1.29
NPHP1O15259 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
NPHP1O15259 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP1O15259 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP1O15259 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP1O15259 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP1O15259 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
NPHP1O15259 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
NPHP1O15259 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC23.1■■□□□ 1.29
NPHP1O15259 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
NPHP1O15259 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.1■■□□□ 1.29
NPHP1O15259 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC23.1■■□□□ 1.29
NPHP1O15259 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC23.1■■□□□ 1.29
NPHP1O15259 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC23.1■■□□□ 1.29
NPHP1O15259 AC096582.2-201ENST00000510860 516 ntBASIC23.1■■□□□ 1.29
NPHP1O15259 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC23.1■■□□□ 1.29
NPHP1O15259 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC23.1■■□□□ 1.29
NPHP1O15259 IGHV3OR16-7-201ENST00000604106 360 ntBASIC23.1■■□□□ 1.29
NPHP1O15259 TP73-AS1-207ENST00000624167 988 ntBASIC23.1■■□□□ 1.29
NPHP1O15259 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
NPHP1O15259 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
NPHP1O15259 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC23.09■■□□□ 1.29
NPHP1O15259 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP1O15259 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP1O15259 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP1O15259 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC23.09■■□□□ 1.29
NPHP1O15259 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
NPHP1O15259 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
NPHP1O15259 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
NPHP1O15259 CDV3-207ENST00000508481 661 ntTSL 3 BASIC23.09■■□□□ 1.29
NPHP1O15259 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC23.09■■□□□ 1.29
NPHP1O15259 IRF8-202ENST00000562492 946 ntTSL 3 BASIC23.09■■□□□ 1.29
NPHP1O15259 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
NPHP1O15259 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC23.09■■□□□ 1.29
NPHP1O15259 NME4-212ENST00000621774 904 ntTSL 3 BASIC23.09■■□□□ 1.29
NPHP1O15259 AC117500.6-201ENST00000624871 588 ntBASIC23.09■■□□□ 1.29
NPHP1O15259 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP1O15259 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC23.09■■□□□ 1.29
NPHP1O15259 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP1O15259 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP1O15259 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP1O15259 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC23.09■■□□□ 1.29
NPHP1O15259 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP1O15259 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
NPHP1O15259 IL9RP2-201ENST00000423948 1312 ntBASIC23.08■■□□□ 1.29
NPHP1O15259 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP1O15259 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP1O15259 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP1O15259 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP1O15259 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC23.08■■□□□ 1.29
NPHP1O15259 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP1O15259 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.29
NPHP1O15259 KRT18P13-201ENST00000400056 1290 ntBASIC23.08■■□□□ 1.29
NPHP1O15259 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP1O15259 POM121L3P-201ENST00000419331 1163 ntBASIC23.08■■□□□ 1.29
NPHP1O15259 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC23.08■■□□□ 1.29
NPHP1O15259 AF186996.4-201ENST00000467186 377 ntBASIC23.08■■□□□ 1.29
NPHP1O15259 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC23.08■■□□□ 1.29
NPHP1O15259 AC093909.1-201ENST00000504731 1122 ntBASIC23.08■■□□□ 1.29
NPHP1O15259 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
NPHP1O15259 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
NPHP1O15259 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
NPHP1O15259 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC23.08■■□□□ 1.29
NPHP1O15259 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC23.08■■□□□ 1.29
NPHP1O15259 Z98044.1-201ENST00000632503 1764 ntBASIC23.08■■□□□ 1.29
NPHP1O15259 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP1O15259 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
NPHP1O15259 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC23.08■■□□□ 1.28
NPHP1O15259 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms