Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
UBFD1O14562 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
UBFD1O14562 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
UBFD1O14562 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
UBFD1O14562 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
UBFD1O14562 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.85■□□□□ 0.45
UBFD1O14562 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.85■□□□□ 0.45
UBFD1O14562 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.85■□□□□ 0.45
UBFD1O14562 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.85■□□□□ 0.45
UBFD1O14562 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
UBFD1O14562 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
UBFD1O14562 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
UBFD1O14562 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.85■□□□□ 0.45
UBFD1O14562 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.85■□□□□ 0.45
UBFD1O14562 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.85■□□□□ 0.45
UBFD1O14562 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.85■□□□□ 0.45
UBFD1O14562 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.85■□□□□ 0.45
UBFD1O14562 AC233702.5-201ENST00000584107 538 ntBASIC17.85■□□□□ 0.45
UBFD1O14562 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.85■□□□□ 0.45
UBFD1O14562 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
UBFD1O14562 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
UBFD1O14562 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.84■□□□□ 0.45
UBFD1O14562 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
UBFD1O14562 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
UBFD1O14562 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.84■□□□□ 0.45
UBFD1O14562 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
UBFD1O14562 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.84■□□□□ 0.45
UBFD1O14562 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.84■□□□□ 0.45
UBFD1O14562 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
UBFD1O14562 GCSHP5-201ENST00000443090 522 ntBASIC17.84■□□□□ 0.45
UBFD1O14562 AL158047.1-201ENST00000445918 881 ntBASIC17.84■□□□□ 0.45
UBFD1O14562 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.84■□□□□ 0.45
UBFD1O14562 AL049637.2-201ENST00000641778 930 ntBASIC17.84■□□□□ 0.45
UBFD1O14562 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
UBFD1O14562 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.84■□□□□ 0.45
UBFD1O14562 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.84■□□□□ 0.45
UBFD1O14562 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
UBFD1O14562 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.83■□□□□ 0.45
UBFD1O14562 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
UBFD1O14562 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.83■□□□□ 0.45
UBFD1O14562 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
UBFD1O14562 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
UBFD1O14562 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.83■□□□□ 0.45
UBFD1O14562 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
UBFD1O14562 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
UBFD1O14562 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
UBFD1O14562 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
UBFD1O14562 AC012618.2-201ENST00000428058 849 ntBASIC17.83■□□□□ 0.44
UBFD1O14562 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.83■□□□□ 0.44
UBFD1O14562 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.83■□□□□ 0.44
UBFD1O14562 AL023803.3-201ENST00000615559 522 ntBASIC17.83■□□□□ 0.44
UBFD1O14562 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
UBFD1O14562 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
UBFD1O14562 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC17.83■□□□□ 0.44
UBFD1O14562 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.83■□□□□ 0.44
UBFD1O14562 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
UBFD1O14562 AC012317.2-201ENST00000623305 2251 ntBASIC17.83■□□□□ 0.44
UBFD1O14562 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.83■□□□□ 0.44
UBFD1O14562 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
UBFD1O14562 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
UBFD1O14562 AC138932.1-201ENST00000534164 6830 ntBASIC17.83■□□□□ 0.44
UBFD1O14562 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.83■□□□□ 0.44
UBFD1O14562 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.82■□□□□ 0.44
UBFD1O14562 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.82■□□□□ 0.44
UBFD1O14562 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
UBFD1O14562 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.82■□□□□ 0.44
UBFD1O14562 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
UBFD1O14562 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms