Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
CUX2O14529 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC31.32■■■□□ 2.6
CUX2O14529 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CUX2O14529 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
CUX2O14529 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
CUX2O14529 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC31.32■■■□□ 2.6
CUX2O14529 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC31.32■■■□□ 2.6
CUX2O14529 MSRA-206ENST00000521209 814 ntTSL 3 BASIC31.32■■■□□ 2.6
CUX2O14529 AC005593.1-201ENST00000624894 515 ntBASIC31.32■■■□□ 2.6
CUX2O14529 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
CUX2O14529 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC31.32■■■□□ 2.6
CUX2O14529 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
CUX2O14529 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC31.32■■■□□ 2.6
CUX2O14529 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC31.32■■■□□ 2.6
CUX2O14529 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
CUX2O14529 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC31.31■■■□□ 2.6
CUX2O14529 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC31.31■■■□□ 2.6
CUX2O14529 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
CUX2O14529 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
CUX2O14529 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC31.31■■■□□ 2.6
CUX2O14529 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
CUX2O14529 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC31.31■■■□□ 2.6
CUX2O14529 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC31.31■■■□□ 2.6
CUX2O14529 NAT14-202ENST00000587400 416 ntTSL 5 BASIC31.31■■■□□ 2.6
CUX2O14529 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CUX2O14529 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
CUX2O14529 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC31.31■■■□□ 2.6
CUX2O14529 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC31.31■■■□□ 2.6
CUX2O14529 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CUX2O14529 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC31.3■■■□□ 2.6
CUX2O14529 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CUX2O14529 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CUX2O14529 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CUX2O14529 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC31.3■■■□□ 2.6
CUX2O14529 MIR661-201ENST00000384842 89 ntBASIC31.3■■■□□ 2.6
CUX2O14529 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC31.3■■■□□ 2.6
CUX2O14529 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC31.3■■■□□ 2.6
CUX2O14529 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC31.3■■■□□ 2.6
CUX2O14529 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
CUX2O14529 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC31.3■■■□□ 2.6
CUX2O14529 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CUX2O14529 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC31.3■■■□□ 2.6
CUX2O14529 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC31.3■■■□□ 2.6
CUX2O14529 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CUX2O14529 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
CUX2O14529 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC31.29■■■□□ 2.6
CUX2O14529 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC31.29■■■□□ 2.6
CUX2O14529 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CUX2O14529 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
CUX2O14529 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
CUX2O14529 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC31.29■■■□□ 2.6
CUX2O14529 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC31.29■■■□□ 2.6
CUX2O14529 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
CUX2O14529 PDPK2P-202ENST00000562415 1191 ntBASIC31.29■■■□□ 2.6
CUX2O14529 AC015911.4-201ENST00000588022 1070 ntBASIC31.29■■■□□ 2.6
CUX2O14529 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CUX2O14529 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
CUX2O14529 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
CUX2O14529 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
CUX2O14529 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
CUX2O14529 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
CUX2O14529 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
CUX2O14529 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC31.28■■■□□ 2.6
CUX2O14529 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
CUX2O14529 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CUX2O14529 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CUX2O14529 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CUX2O14529 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
CUX2O14529 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
CUX2O14529 SLC4A1APP2-201ENST00000424054 1259 ntBASIC31.27■■■□□ 2.6
CUX2O14529 NMU-203ENST00000507338 658 ntTSL 3 BASIC31.27■■■□□ 2.6
CUX2O14529 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC31.27■■■□□ 2.6
CUX2O14529 AL513210.1-201ENST00000629608 234 ntBASIC31.27■■■□□ 2.6
CUX2O14529 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC31.27■■■□□ 2.6
CUX2O14529 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CUX2O14529 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC31.27■■■□□ 2.6
CUX2O14529 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC31.27■■■□□ 2.6
CUX2O14529 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC31.27■■■□□ 2.6
CUX2O14529 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
CUX2O14529 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC31.27■■■□□ 2.6
CUX2O14529 AC084346.2-201ENST00000607097 949 ntBASIC31.27■■■□□ 2.6
CUX2O14529 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC31.26■■■□□ 2.6
CUX2O14529 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC31.26■■■□□ 2.6
CUX2O14529 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
CUX2O14529 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CUX2O14529 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC31.26■■■□□ 2.59
CUX2O14529 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.59
CUX2O14529 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
CUX2O14529 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CUX2O14529 AC092667.1-201ENST00000434301 2586 ntBASIC31.26■■■□□ 2.59
CUX2O14529 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CUX2O14529 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC31.26■■■□□ 2.59
CUX2O14529 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC31.26■■■□□ 2.59
CUX2O14529 AC109322.1-201ENST00000524499 1264 ntBASIC31.26■■■□□ 2.59
CUX2O14529 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC31.26■■■□□ 2.59
CUX2O14529 AC018845.2-201ENST00000568326 409 ntBASIC31.26■■■□□ 2.59
CUX2O14529 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC31.26■■■□□ 2.59
CUX2O14529 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC31.26■■■□□ 2.59
CUX2O14529 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
CUX2O14529 AL512353.2-201ENST00000448759 1962 ntBASIC31.26■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms