Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 GPR53P-205ENST00000457298 1084 ntBASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC85CA6NKD9 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC85CA6NKD9 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 AC074386.1-202ENST00000463561 864 ntBASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 KRT19P2-202ENST00000557173 1012 ntBASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 HFE2-206ENST00000634927 506 ntTSL 4 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 SDHAP1-207ENST00000440850 2000 ntBASIC20.26■□□□□ 0.83
CCDC85CA6NKD9 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC85CA6NKD9 ZNF815P-204ENST00000434898 1737 ntBASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 AC004817.3-201ENST00000602957 2129 ntBASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 CNN2P2-201ENST00000443536 909 ntBASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 CNN2P3-201ENST00000450201 906 ntBASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 AL136317.3-201ENST00000618497 906 ntBASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 AC004790.2-201ENST00000623588 572 ntBASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CCDC85CA6NKD9 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 HLA-DPB2-205ENST00000435074 1188 ntBASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 SRP9-204ENST00000619790 377 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC85CA6NKD9 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms