Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 AL499627.1-201ENST00000569373 2188 ntBASIC31.78■■■□□ 2.68
CCDC88BA6NC98 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC31.78■■■□□ 2.68
CCDC88BA6NC98 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
CCDC88BA6NC98 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC31.77■■■□□ 2.68
CCDC88BA6NC98 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC31.77■■■□□ 2.68
CCDC88BA6NC98 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC31.77■■■□□ 2.68
CCDC88BA6NC98 AC104109.2-201ENST00000602919 1418 ntBASIC31.77■■■□□ 2.68
CCDC88BA6NC98 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC31.77■■■□□ 2.68
CCDC88BA6NC98 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC31.77■■■□□ 2.68
CCDC88BA6NC98 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC31.77■■■□□ 2.68
CCDC88BA6NC98 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
CCDC88BA6NC98 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC31.77■■■□□ 2.68
CCDC88BA6NC98 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CCDC88BA6NC98 ZNF259P1-201ENST00000407656 1365 ntBASIC31.77■■■□□ 2.68
CCDC88BA6NC98 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC31.76■■■□□ 2.68
CCDC88BA6NC98 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC31.76■■■□□ 2.68
CCDC88BA6NC98 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC31.76■■■□□ 2.68
CCDC88BA6NC98 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC31.76■■■□□ 2.68
CCDC88BA6NC98 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
CCDC88BA6NC98 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC31.76■■■□□ 2.68
CCDC88BA6NC98 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC31.76■■■□□ 2.67
CCDC88BA6NC98 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
CCDC88BA6NC98 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC31.76■■■□□ 2.67
CCDC88BA6NC98 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC31.76■■■□□ 2.67
CCDC88BA6NC98 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
CCDC88BA6NC98 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
CCDC88BA6NC98 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC31.76■■■□□ 2.67
CCDC88BA6NC98 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC31.75■■■□□ 2.67
CCDC88BA6NC98 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC31.74■■■□□ 2.67
CCDC88BA6NC98 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC31.74■■■□□ 2.67
CCDC88BA6NC98 NMU-202ENST00000505262 693 ntTSL 3 BASIC31.74■■■□□ 2.67
CCDC88BA6NC98 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC31.74■■■□□ 2.67
CCDC88BA6NC98 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC31.74■■■□□ 2.67
CCDC88BA6NC98 AC055717.3-201ENST00000622967 595 ntBASIC31.74■■■□□ 2.67
CCDC88BA6NC98 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC31.74■■■□□ 2.67
CCDC88BA6NC98 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC31.74■■■□□ 2.67
CCDC88BA6NC98 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC31.74■■■□□ 2.67
CCDC88BA6NC98 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CCDC88BA6NC98 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
CCDC88BA6NC98 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CCDC88BA6NC98 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CCDC88BA6NC98 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CCDC88BA6NC98 FUOM-202ENST00000368551 628 ntTSL 3 BASIC31.73■■■□□ 2.67
CCDC88BA6NC98 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC31.73■■■□□ 2.67
CCDC88BA6NC98 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC31.73■■■□□ 2.67
CCDC88BA6NC98 LINC00602-201ENST00000629776 2065 ntBASIC31.73■■■□□ 2.67
CCDC88BA6NC98 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
CCDC88BA6NC98 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
CCDC88BA6NC98 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC31.73■■■□□ 2.67
CCDC88BA6NC98 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 MIR940-201ENST00000401276 94 ntBASIC31.72■■■□□ 2.67
CCDC88BA6NC98 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 AL139288.1-201ENST00000623748 933 ntBASIC31.72■■■□□ 2.67
CCDC88BA6NC98 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 KRT18P65-201ENST00000439811 1286 ntBASIC31.72■■■□□ 2.67
CCDC88BA6NC98 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CCDC88BA6NC98 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 COX5A-204ENST00000567270 579 ntTSL 3 BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 FAM197Y3-203ENST00000618346 717 ntBASIC31.71■■■□□ 2.67
CCDC88BA6NC98 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
CCDC88BA6NC98 AC008735.5-201ENST00000623544 497 ntBASIC31.71■■■□□ 2.67
CCDC88BA6NC98 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC31.7■■■□□ 2.67
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms