Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM4Q9C037 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.38■□□□□ 0.53
TRIM4Q9C037 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 AL354751.1-201ENST00000412768 1863 ntBASIC18.37■□□□□ 0.53
TRIM4Q9C037 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 AC008894.3-201ENST00000624324 3103 ntBASIC18.37■□□□□ 0.53
TRIM4Q9C037 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 LIN28AP1-201ENST00000429574 405 ntBASIC18.37■□□□□ 0.53
TRIM4Q9C037 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 AC073195.1-201ENST00000607241 877 ntBASIC18.37■□□□□ 0.53
TRIM4Q9C037 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM4Q9C037 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM4Q9C037 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM4Q9C037 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM4Q9C037 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM4Q9C037 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 AC090164.3-201ENST00000610780 2143 ntBASIC18.36■□□□□ 0.53
TRIM4Q9C037 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM4Q9C037 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM4Q9C037 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM4Q9C037 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM4Q9C037 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM4Q9C037 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.36■□□□□ 0.53
TRIM4Q9C037 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 KRT18P48-201ENST00000434763 852 ntBASIC18.35■□□□□ 0.53
TRIM4Q9C037 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 KRT16P5-201ENST00000455284 522 ntBASIC18.35■□□□□ 0.53
TRIM4Q9C037 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 AC067852.2-201ENST00000590513 2313 ntBASIC18.35■□□□□ 0.53
TRIM4Q9C037 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRIM4Q9C037 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.35■□□□□ 0.53
TRIM4Q9C037 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms