Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 DRAXINP1-201ENST00000437611 948 ntBASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 MIR3652-201ENST00000579335 131 ntBASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC20.14■□□□□ 0.81
TRAIPQ9BWF2 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 AP002414.4-201ENST00000589764 1148 ntBASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAIPQ9BWF2 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 KRT89P-201ENST00000620027 1478 ntBASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 AL357033.4-201ENST00000617703 1807 ntBASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 NUS1P1-201ENST00000446295 882 ntBASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 REEP1-209ENST00000541910 969 ntTSL 2 BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 AL390719.2-201ENST00000606993 987 ntBASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 MTMR9LP-203ENST00000426597 1545 ntBASIC20.12■□□□□ 0.81
TRAIPQ9BWF2 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 AP000593.1-201ENST00000393668 712 ntBASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 AC005332.3-201ENST00000589904 676 ntBASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 AC012313.10-201ENST00000623509 926 ntBASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAIPQ9BWF2 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms