Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 C1QBPP2-201ENST00000528754 825 ntBASIC16.09■□□□□ 0.17
NKX3-1Q99801 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 AP006294.2-201ENST00000641667 209 ntBASIC16.09■□□□□ 0.17
NKX3-1Q99801 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 KRT8P32-201ENST00000512863 1461 ntBASIC16.09■□□□□ 0.17
NKX3-1Q99801 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
NKX3-1Q99801 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.09■□□□□ 0.17
NKX3-1Q99801 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.08■□□□□ 0.17
NKX3-1Q99801 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NKX3-1Q99801 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
NKX3-1Q99801 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NKX3-1Q99801 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.08■□□□□ 0.17
NKX3-1Q99801 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.08■□□□□ 0.17
NKX3-1Q99801 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.08■□□□□ 0.17
NKX3-1Q99801 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
NKX3-1Q99801 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
NKX3-1Q99801 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
NKX3-1Q99801 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
NKX3-1Q99801 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
NKX3-1Q99801 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.07■□□□□ 0.16
NKX3-1Q99801 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 GCSHP5-201ENST00000443090 522 ntBASIC16.07■□□□□ 0.16
NKX3-1Q99801 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
NKX3-1Q99801 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NKX3-1Q99801 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC16.07■□□□□ 0.16
NKX3-1Q99801 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC16.07■□□□□ 0.16
NKX3-1Q99801 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NKX3-1Q99801 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
NKX3-1Q99801 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
NKX3-1Q99801 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.07■□□□□ 0.16
NKX3-1Q99801 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.07■□□□□ 0.16
NKX3-1Q99801 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
NKX3-1Q99801 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 AC093677.2-201ENST00000600169 1863 ntBASIC16.06■□□□□ 0.16
NKX3-1Q99801 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
NKX3-1Q99801 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NKX3-1Q99801 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms