Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
ERCC4Q92889 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.9■□□□□ 0.94
ERCC4Q92889 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 B3GAT3P1-201ENST00000471720 806 ntBASIC20.9■□□□□ 0.94
ERCC4Q92889 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.9■□□□□ 0.94
ERCC4Q92889 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.9■□□□□ 0.94
ERCC4Q92889 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
ERCC4Q92889 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ERCC4Q92889 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.9■□□□□ 0.94
ERCC4Q92889 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
ERCC4Q92889 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
ERCC4Q92889 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
ERCC4Q92889 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.89■□□□□ 0.94
ERCC4Q92889 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
ERCC4Q92889 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
ERCC4Q92889 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
ERCC4Q92889 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
ERCC4Q92889 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ERCC4Q92889 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ERCC4Q92889 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.89■□□□□ 0.93
ERCC4Q92889 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.89■□□□□ 0.93
ERCC4Q92889 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
ERCC4Q92889 FAM207BP-201ENST00000447172 505 ntBASIC20.89■□□□□ 0.93
ERCC4Q92889 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ERCC4Q92889 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.89■□□□□ 0.93
ERCC4Q92889 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.89■□□□□ 0.93
ERCC4Q92889 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.89■□□□□ 0.93
ERCC4Q92889 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.89■□□□□ 0.93
ERCC4Q92889 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.89■□□□□ 0.93
ERCC4Q92889 AL031985.4-201ENST00000642138 673 ntBASIC20.89■□□□□ 0.93
ERCC4Q92889 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.89■□□□□ 0.93
ERCC4Q92889 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.89■□□□□ 0.93
ERCC4Q92889 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
ERCC4Q92889 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ERCC4Q92889 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ERCC4Q92889 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
ERCC4Q92889 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
ERCC4Q92889 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ERCC4Q92889 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
ERCC4Q92889 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ERCC4Q92889 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ERCC4Q92889 AC134043.2-201ENST00000624206 2238 ntBASIC20.88■□□□□ 0.93
ERCC4Q92889 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
ERCC4Q92889 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.88■□□□□ 0.93
ERCC4Q92889 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.88■□□□□ 0.93
ERCC4Q92889 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.88■□□□□ 0.93
ERCC4Q92889 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ERCC4Q92889 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ERCC4Q92889 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.88■□□□□ 0.93
ERCC4Q92889 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
ERCC4Q92889 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ERCC4Q92889 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.88■□□□□ 0.93
ERCC4Q92889 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ERCC4Q92889 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ERCC4Q92889 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
ERCC4Q92889 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ERCC4Q92889 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.88■□□□□ 0.93
ERCC4Q92889 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 AC112777.1-201ENST00000540175 1423 ntBASIC20.87■□□□□ 0.93
ERCC4Q92889 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
ERCC4Q92889 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
ERCC4Q92889 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
ERCC4Q92889 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
ERCC4Q92889 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 FAM197Y1-201ENST00000421178 764 ntBASIC20.87■□□□□ 0.93
ERCC4Q92889 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.87■□□□□ 0.93
ERCC4Q92889 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.87■□□□□ 0.93
ERCC4Q92889 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 MIR6786-201ENST00000616843 113 ntBASIC20.87■□□□□ 0.93
ERCC4Q92889 AL359736.2-201ENST00000621992 437 ntBASIC20.87■□□□□ 0.93
ERCC4Q92889 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
ERCC4Q92889 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
ERCC4Q92889 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ERCC4Q92889 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.87■□□□□ 0.93
ERCC4Q92889 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ERCC4Q92889 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.86■□□□□ 0.93
ERCC4Q92889 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms