Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 AC011506.1-201ENST00000474329 610 ntBASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCHCR1Q8TD31 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 UNC93B2-201ENST00000285383 730 ntBASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 FAM207BP-201ENST00000447172 505 ntBASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 AC091390.4-202ENST00000476426 537 ntBASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 DGCR10-201ENST00000609839 495 ntBASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
CCHCR1Q8TD31 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 SLC25A6P5-201ENST00000435663 894 ntBASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CCHCR1Q8TD31 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 HTR7P1-202ENST00000624664 4411 ntBASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 AC139713.2-201ENST00000641328 2723 ntBASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 AC008764.6-201ENST00000595909 2069 ntBASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CCHCR1Q8TD31 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms