Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 ELL2P1-201ENST00000413990 1906 ntBASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 AC097374.2-201ENST00000618617 1306 ntBASIC21.78■■□□□ 1.08
SMC1BQ8NDV3 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 METTL26-204ENST00000397665 558 ntTSL 2 BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 TSEN15P1-201ENST00000423257 515 ntBASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 SLC4A1APP2-201ENST00000424054 1259 ntBASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 AC093512.1-201ENST00000617969 520 ntBASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 PGM5P2-202ENST00000637225 1043 ntBASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.77■■□□□ 1.08
SMC1BQ8NDV3 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 CEND1P1-201ENST00000451006 455 ntBASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 RNF151-202ENST00000569210 853 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 AL513190.1-201ENST00000621254 727 ntBASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 AC005593.1-201ENST00000624894 515 ntBASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SMC1BQ8NDV3 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 AC108751.1-201ENST00000490852 363 ntBASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.75■■□□□ 1.07
SMC1BQ8NDV3 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 ATP6V0CP3-201ENST00000417255 467 ntBASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SMC1BQ8NDV3 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms