Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCDC60Q8IWA6 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 AC090616.6-201ENST00000582640 721 ntBASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 AC126763.1-201ENST00000552015 2118 ntBASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCDC60Q8IWA6 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 LINC00265-3P-201ENST00000447588 903 ntBASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 TOB2P1-201ENST00000469761 992 ntBASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 MIR3652-201ENST00000579335 131 ntBASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 AL592071.1-201ENST00000611956 408 ntBASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 IGHV3-41-201ENST00000613121 348 ntBASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 LINC01126-201ENST00000623515 1646 ntBASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CCDC60Q8IWA6 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 RN7SL606P-201ENST00000472779 293 ntBASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CCDC60Q8IWA6 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC60Q8IWA6 AC098818.2-201ENST00000564925 2320 ntBASIC20.39■□□□□ 0.86
CCDC60Q8IWA6 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
CCDC60Q8IWA6 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CCDC60Q8IWA6 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC60Q8IWA6 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC60Q8IWA6 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CCDC60Q8IWA6 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms