Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13CQ709C8 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 IRF8-202ENST00000562492 946 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13CQ709C8 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13CQ709C8 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13CQ709C8 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13CQ709C8 BID-204ENST00000399767 2129 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13CQ709C8 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 CNN2P11-201ENST00000429351 262 ntBASIC15.31■□□□□ 0.04
VPS13CQ709C8 KRT18P3-201ENST00000451602 1288 ntBASIC15.31■□□□□ 0.04
VPS13CQ709C8 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS13CQ709C8 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS13CQ709C8 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 MTMR9LP-203ENST00000426597 1545 ntBASIC15.3■□□□□ 0.04
VPS13CQ709C8 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 HES2-202ENST00000377836 507 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.3■□□□□ 0.04
VPS13CQ709C8 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
VPS13CQ709C8 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 YBX1P5-201ENST00000509441 847 ntBASIC15.29■□□□□ 0.04
VPS13CQ709C8 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 ZNF259P1-201ENST00000407656 1365 ntBASIC15.29■□□□□ 0.04
VPS13CQ709C8 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS13CQ709C8 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13CQ709C8 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 HTR5BP-201ENST00000430851 1154 ntBASIC15.28■□□□□ 0.04
VPS13CQ709C8 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 AL596442.2-201ENST00000610240 980 ntBASIC15.28■□□□□ 0.04
VPS13CQ709C8 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS13CQ709C8 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13CQ709C8 CALY-203ENST00000368558 825 ntTSL 5 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms