Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 AC092910.1-201ENST00000482027 1129 ntBASIC23.12■■□□□ 1.29
RC3H1Q5TC82 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 AL139288.1-201ENST00000623748 933 ntBASIC23.12■■□□□ 1.29
RC3H1Q5TC82 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
RC3H1Q5TC82 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 CTNS-203ENST00000399306 803 ntTSL 3 BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
RC3H1Q5TC82 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 SOD2-201ENST00000337404 991 ntTSL 2 BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 GPX1P2-201ENST00000429271 606 ntBASIC23.1■■□□□ 1.29
RC3H1Q5TC82 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 KRT18P3-201ENST00000451602 1288 ntBASIC23.1■■□□□ 1.29
RC3H1Q5TC82 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 HOTTIP_1.1-201ENST00000620415 57 ntBASIC23.1■■□□□ 1.29
RC3H1Q5TC82 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC23.1■■□□□ 1.29
RC3H1Q5TC82 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
RC3H1Q5TC82 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
RC3H1Q5TC82 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
RC3H1Q5TC82 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RC3H1Q5TC82 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
RC3H1Q5TC82 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
RC3H1Q5TC82 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RC3H1Q5TC82 YBX2P1-201ENST00000394192 760 ntBASIC23.08■■□□□ 1.29
RC3H1Q5TC82 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
RC3H1Q5TC82 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC23.08■■□□□ 1.29
RC3H1Q5TC82 KRT18P65-201ENST00000439811 1286 ntBASIC23.08■■□□□ 1.29
RC3H1Q5TC82 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
RC3H1Q5TC82 AP001160.2-201ENST00000596071 487 ntBASIC23.08■■□□□ 1.29
RC3H1Q5TC82 MYLKP1-201ENST00000509077 1580 ntBASIC23.08■■□□□ 1.29
RC3H1Q5TC82 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
RC3H1Q5TC82 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
RC3H1Q5TC82 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.28
RC3H1Q5TC82 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RC3H1Q5TC82 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
RC3H1Q5TC82 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC23.07■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms